Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Forward (+)

18338755 .. 18340363

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTATCCAAACGCAGTACTCTCCACTAGTTCACATCGTCGTTTGGTTTTGTCTACAACTGTTGGTGCTTCTTGTACATGTTATTCTTTTTGTTGTAATCGTGTTCCTCCTCTCCGCAAAGCTCTGGAGCAGCTTCTGATCTTTGACGAATTTGAGATGGGTTCAAGCCGATCAGCGAGCTCTGCGGCGAATAAGGAACGCCTGCGATGGATGCAAGAGCTGCATGATAGGTTTGTGGAGGCAGTTACTAAGCTTGGTGGCCCTGATCGGTATCTTGAAGGCCATGAGCGTCTCTGGACTGACCATCTACCACATCAAAAGCCATTTGCAGATTCTTTTTGTGGGTTTATTTTTAAGGCGCAAAAGAGCCTGAAACAGAAATTTGAAGCCCAAGGAAGGTTTCTTGAAAGATATTCAGCAGAACGCCATAACACAAACAAGAACCGCCCGATCCTGATCACAAAACCTAAAAAAGCTCACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

162

Amino Acids

18.59

Weight (kDa)

9.64

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	3 cut(s)	115, 185, 445
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	149, 380
AfaI	GTAC	2 cut(s)	18, 76
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	165, 278, 386, 407
AhlI	ACTAGT	1 cut(s)	26
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	6 cut(s)	122, 133, 180, 220, 253, 476
AluI	AGCT	6 cut(s)	122, 133, 180, 220, 253, 476
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	2 cut(s)	259, 280
ApeKI	GCWGC	2 cut(s)	130, 220
ApoI	RAATTY	2 cut(s)	149, 380
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	142, 207
BccI	CCATC	3 cut(s)	151, 201, 312
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	296
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	131, 186, 221
BlsI	GCNGC	3 cut(s)	132, 187, 222
BmcAI	AGTACT	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	260
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	146
BsaBI	GATNNNNATC	2 cut(s)	270, 455
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse8I	GATNNNNATC	2 cut(s)	270, 455
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	2 cut(s)	270, 455
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	142, 207
BshFI	GGCC	2 cut(s)	261, 282
BsiHKAI	GWGCWC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	261, 282
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	5 cut(s)	138, 170, 265, 450, 456
BspACI	CCGC	3 cut(s)	115, 185, 445
BspANI	GGCC	2 cut(s)	261, 282
BspPI	GGATC	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	5 cut(s)	138, 170, 265, 450, 456
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	178, 203
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	5 cut(s)	141, 173, 268, 453, 459
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	138, 170, 265, 450, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 211, 220
BstNSI	RCATGY	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	142, 207
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	261, 282
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	178, 203
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	17, 75
CviAII	CATG	3 cut(s)	78, 224, 284
CviQI	GTAC	2 cut(s)	17, 75
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	5 cut(s)	140, 172, 267, 452, 458
DpnII	GATC	5 cut(s)	138, 170, 265, 450, 456
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	3 cut(s)	81, 227, 287
FaiI	YATR	4 cut(s)	79, 225, 285, 429
FatI	CATG	3 cut(s)	77, 223, 283
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	3 cut(s)	131, 186, 221
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	131, 186, 221
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	3 cut(s)	131, 186, 221
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	261, 282
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	81, 227, 287
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	32, 54
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	5 cut(s)	125, 275, 295, 404, 454
Hpy8I	GTNNAC	2 cut(s)	32, 54
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	272, 390
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	214, 223, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 211, 220
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	81, 227, 287
HspAI	GCGC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	5 cut(s)	138, 170, 265, 450, 456
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	110, 215, 276, 280, 383, 467
Lsp1109I	GCAGC	2 cut(s)	142, 207
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	140, 172, 267, 452, 458
MboI	GATC	5 cut(s)	138, 170, 265, 450, 456
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	2 cut(s)	149, 380
MnlI	CCTC	3 cut(s)	117, 120, 232
MseI	TTAA	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	182, 211, 220
NdeII	GATC	5 cut(s)	138, 170, 265, 450, 456
NlaIII	CATG	3 cut(s)	81, 227, 287
NspI	RCATGY	1 cut(s)	81
PciI	ACATGT	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	132, 187, 222
PscI	ACATGT	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	18, 76
RsaNI	GTAC	2 cut(s)	17, 75
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	131, 186, 221
Sau3AI	GATC	5 cut(s)	138, 170, 265, 450, 456
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	9 cut(s)	124, 135, 182, 222, 233, 255, 401, 469, 478
SfaNI	GCATC	1 cut(s)	201
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	2 cut(s)	149, 380
SsiI	CCGC	3 cut(s)	115, 185, 445
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	61
TasI	AATT	2 cut(s)	149, 380
TatI	WGTACW	2 cut(s)	16, 74
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseI	GCWGC	2 cut(s)	130, 220
XapI	RAATTY	2 cut(s)	149, 380
XceI	RCATGY	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.