Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013697

Physical Location & Seq

Genomic Coordinates Forward (+)

16791772 .. 16793400

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGTTTGAGACGATCAGAGAGCTCTGCGGCAAACAAGGATCGCCTGCGGTGGACGCAAGAGCTGCATGATAGGTTTGTGGAGGCAGTTACTAAGCTTGGTGGCCCTGATCGGGCAACACCAAAGGGTATCTTGAAAGCTATGAGTGTTTCCGGACTGACCATCTACCACATCAAAAGTCATTTGCAGAAGTATAGAATCTCAAAGTTTATTCCAGAGTCGACGAGCAAAGGCAAGCTTCAGAGAAAAAACATTACGGAAATGCTGCCTAATTTTGGTACAACATCTGCAGCTCAGCTCAATGAAGCCTTCAAAATCATGCAGATACAGGTGCAAAAGAACCTGAAACATAAACTTGAATCCCAAGGAAGGTTTCTTGAAAGATATTCAGCAGAACGCCATAACACAAACAAGAACCGTCCTATCGTGATCACAAAACCTAGAAAAGCACCCTTGTCGCGGACATCGCTCCCTTCTCTCTGTGACGACTCGGAATCAAATGCAAAGGACTTTGCAACCGACTCGGAGCCTGACAGAAGCGAAACACAGTCATCTGCAGAACAATTCCGAACTCTGAAGAAGCTCAGGCTGCACCATCATCAAAATGACCCTAATGTCCAGTTTGCATTTAACTCAGAGTTGTATACTGCTCAAAGCCACAGCTTGCTTCTCCCTCATGAGGAGGACCACATCAGCTTTCCTTGGAACTTTGTAGCCTGCTCATCTCCTTTAGCAGTGCCCAGCTGCTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

252

Amino Acids

28.61

Weight (kDa)

9.66

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013697)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11361
malus_domestica	MD04G1154300.v1.1 MD12G1167700.v1.1
prunus_persica	Prupe.6G278300_v2.0.a1
pyrus_communis	pycom04g13920 pycom12g15940
rosa_chinensis	RchiOBHm_Chr3g0462981 RchiOBHm_Chr3g0462991
rosa_laevigata	RLG00000024820
rosa_multiflora	Rmu_sc0000766.1_g000026
rosa_roxburghii	Rroxscaffold_2G00124310
rosa_rugosa	Rorug03G0060900
rosa_samantha	Rh3AG118600 Rh3BG123600 Rh3CG125300 Rh3DG124400 Rh5BG001800
rosa_wichuraiana	Rw3G010060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccI	GTMKAC	2 cut(s)	221, 644
AccII	CGCG	1 cut(s)	460
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	3 cut(s)	29, 49, 460
AclWI	GGATC	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	224, 596
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	5 cut(s)	112, 275, 369, 459, 679
AgsI	TTSAA	4 cut(s)	136, 313, 359, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	5 cut(s)	64, 265, 290, 589, 744
AspS9I	GGNCC	2 cut(s)	104, 685
AvaII	GGWCC	1 cut(s)	685
BaeGI	GKGCMC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	5 cut(s)	51, 252, 302, 576, 731
BccI	CCATC	2 cut(s)	170, 603
BcgI	CGANNNNNNTGC	4 cut(s)	438, 472, 504, 538
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	288, 555
BisI	GCNGC	6 cut(s)	30, 65, 266, 291, 590, 745
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	6 cut(s)	31, 66, 267, 292, 591, 746
Bme18I	GGWCC	1 cut(s)	685
BmgT120I	GGNCC	2 cut(s)	104, 685
BmiI	GGNNCC	1 cut(s)	528
Bpu10I	CCTNAGC	1 cut(s)	584
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	364, 701
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 275, 369, 459, 679
Bse1I	ACTGG	1 cut(s)	619
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	364, 701
BseLI	CCNNNNNNNGG	5 cut(s)	112, 275, 369, 459, 679
BseMII	CTCAG	3 cut(s)	308, 598, 648
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	5 cut(s)	51, 252, 302, 576, 731
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	5 cut(s)	112, 275, 369, 459, 679
BsmAI	GTCTC	1 cut(s)	4
BsmBI	CGTCTC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	26, 741
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	14, 40, 109, 429
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	3 cut(s)	29, 49, 460
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	3 cut(s)	307, 597, 647
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	2 cut(s)	292, 559
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	364, 701
BssMI	GATC	4 cut(s)	14, 40, 109, 429
BssNAI	GTATAC	1 cut(s)	645
BssT1I	CCWWGG	2 cut(s)	364, 701
Bst1107I	GTATAC	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	419, 549
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	47, 236, 665, 718
BstDEI	CTNAG	4 cut(s)	93, 294, 584, 634
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	4 cut(s)	17, 43, 112, 432
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	4 cut(s)	14, 40, 109, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 64, 466, 589
BstSFI	CTRYAG	2 cut(s)	288, 555
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	5 cut(s)	51, 252, 302, 576, 731
BstZ17I	GTATAC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	450
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	4 cut(s)	47, 236, 665, 718
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	104, 685
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	68, 319, 677
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	4 cut(s)	93, 294, 584, 634
DpnI	GATC	4 cut(s)	16, 42, 111, 431
DpnII	GATC	4 cut(s)	14, 40, 109, 429
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	364, 701
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	685
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	224, 596
EcoICRI	GAGCTC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	364, 701
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	364, 701
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	3 cut(s)	71, 322, 680
FaiI	YATR	9 cut(s)	69, 143, 195, 320, 351, 402, 645, 678, 754
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 222, 254
FatI	CATG	3 cut(s)	67, 318, 676
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	2 cut(s)	221, 644
Fnu4HI	GCNGC	6 cut(s)	30, 65, 266, 291, 590, 745
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	6 cut(s)	30, 65, 266, 291, 590, 745
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	6 cut(s)	30, 65, 266, 291, 590, 745
GsaI	CCCAGC	1 cut(s)	744
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	71, 322, 680
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	2 cut(s)	95, 236
HinfI	GANTC	6 cut(s)	198, 218, 359, 488, 494, 521
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	3 cut(s)	54, 222, 645
Hpy188I	TCNGA	7 cut(s)	19, 243, 493, 526, 569, 576, 637
Hpy188III	TCNNGA	6 cut(s)	133, 153, 215, 377, 427, 677
Hpy8I	GTNNAC	3 cut(s)	54, 222, 645
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	319, 363, 483
HpyCH4III	ACNGT	2 cut(s)	419, 549
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 64, 466, 589
HpyF3I	CTNAG	4 cut(s)	93, 294, 584, 634
Hsp92II	CATG	3 cut(s)	71, 322, 680
Kpn2I	TCCGGA	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	14, 40, 109, 429
LmnI	GCTCC	2 cut(s)	474, 526
Lsp1109I	GCAGC	5 cut(s)	51, 252, 302, 576, 731
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	88, 482
MalI	GATC	4 cut(s)	16, 42, 111, 431
MboI	GATC	4 cut(s)	14, 40, 109, 429
MboII	GAAGA	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	26, 741
MluCI	AATT	2 cut(s)	271, 563
MlyI	GAGTC	3 cut(s)	227, 482, 515
MnlI	CCTC	4 cut(s)	76, 673, 676, 684
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	744
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	55, 64, 466, 589
NdeII	GATC	4 cut(s)	14, 40, 109, 429
NlaIII	CATG	3 cut(s)	71, 322, 680
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	482
PagI	TCATGA	1 cut(s)	676
PfeI	GAWTC	3 cut(s)	198, 359, 494
PkrI	GCNGC	6 cut(s)	31, 66, 267, 292, 591, 746
PleI	GAGTC	3 cut(s)	226, 482, 515
PpsI	GAGTC	3 cut(s)	226, 482, 515
Psp124BI	GAGCTC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	740
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	2 cut(s)	104, 685
PstI	CTGCAG	2 cut(s)	292, 559
PvuII	CAGCTG	1 cut(s)	744
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	6 cut(s)	30, 65, 266, 291, 590, 745
Sau3AI	GATC	4 cut(s)	14, 40, 109, 429
Sau96I	GGNCC	2 cut(s)	104, 685
SchI	GAGTC	3 cut(s)	227, 482, 515
SduI	GDGCHC	2 cut(s)	26, 741
SfcI	CTRYAG	2 cut(s)	288, 555
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	603
Sse9I	AATT	2 cut(s)	271, 563
SsiI	CCGC	3 cut(s)	29, 49, 460
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	364, 701
TaaI	ACNGT	2 cut(s)	419, 549
TaqI	TCGA	1 cut(s)	221
TasI	AATT	2 cut(s)	271, 563
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	198, 359, 494
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	741
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	5 cut(s)	64, 265, 290, 589, 744
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	741
VpaK11BI	GGWCC	1 cut(s)	685
XmiI	GTMKAC	2 cut(s)	221, 644
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.