FvH4_6g13270

Thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005684
Physical Location & Seq
Forward (+)
8067254 .. 8068367
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13270.t1

Sequence Viewer

Length: 735 bp
ATGCCTACTTCCTCTCTTCTCTTTTCCTTGTTATACATCTTAGCCTCGGTCTCAATTACAAATGGGGCTCAACTCATTATAGTAAACAACTGCAATGAAAGCATATGGCCTGGTATACTTGGGAGTGCAGGCCTAGCCACCCCCCAAAGTGGCGGTTTCCATCTTGGAAGTGGTGAGGAAGTAGTTCTGGATGTGCCTGAAAAATGGTCAGGAAGGATATGGGGCAGGCAGGGTTGCTCCTTTGACAGTAATGGAAAGGGTAACTGTGAAACTGGTGACTGTTTTGGCCAATTGCATTGCCAAGGAAAAGGTGGTATCCCTCCAGCAACTGTGGTAGAAATGACACTCGGATCATCAAATTCACCCCTTCATTTCTATGATGTGAGCTTGGTTGATGGCTTCAATCTGCCAGTGTCGATGAAACCTGTTGGGGGTGGAATAGGTTGTGGTGTTGCTTCGTGTGAGGTTGACTTGAACATTTGCTGCCCATCTGCATTGGAAGTGAGGAGAGGAGGCAAGGTTGTAGGGTGTAAGAGTGCCTGCTTGGCTATGCAATCTGCCAAGTATTGCTGCACTGGAAACTATGCAAATCCAAACACTTGCAAGCCAACTCTGTTTGCTCATCTCTTTAAGGCGATATGCCCCAAGGCTTATAGCTATGCTTTTGATGACTCTTCAAGCCTTAACAGATGCAGAGCTTCGCGGTATGTCATCACTTTCTGCCCTCCCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

245

Amino Acids

25.67

Weight (kDa)

7.39

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 242 6.8e-82 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AccII CGCG 1 cut(s) 703
AciI CCGC 2 cut(s) 153, 703
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 149, 431
AgsI TTSAA 3 cut(s) 403, 475, 678
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 387, 657, 698
AluI AGCT 3 cut(s) 387, 657, 698
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 3 cut(s) 107, 130, 286
ApeKI GCWGC 2 cut(s) 483, 570
ApoI RAATTY 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 185, 287, 354
BalI TGGCCA 1 cut(s) 288
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 470, 557
BccI CCATC 3 cut(s) 168, 389, 496
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 326
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 2 cut(s) 484, 571
BlsI GCNGC 2 cut(s) 485, 572
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 680
BpmI CTGGAG 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 45, 301, 645
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 431
Bse1I ACTGG 3 cut(s) 277, 410, 580
Bse3DI GCAATG 2 cut(s) 100, 295
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 45, 301, 645
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 149, 431
BseMI GCAATG 2 cut(s) 100, 295
BseNI ACTGG 3 cut(s) 277, 410, 580
BseRI GAGGAG 2 cut(s) 520, 525
BseXI GCAGC 2 cut(s) 470, 557
BsgI GTGCAG 2 cut(s) 147, 556
Bsh1236I CGCG 1 cut(s) 703
BshFI GGCC 3 cut(s) 109, 132, 288
BslI CCNNNNNNNGG 2 cut(s) 149, 431
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 3 cut(s) 109, 132, 288
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 2 cut(s) 153, 703
BspANI GGCC 3 cut(s) 109, 132, 288
BspFNI CGCG 1 cut(s) 703
BspPI GGATC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 100, 295
BsrI ACTGG 3 cut(s) 277, 410, 580
BssECI CCNNGG 3 cut(s) 45, 301, 645
BssMI GATC 1 cut(s) 350
BssNAI GTATAC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 301, 645
Bst1107I GTATAC 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 4 cut(s) 248, 266, 281, 331
Bst6I CTCTTC 2 cut(s) 21, 679
BstC8I GCNNGC 4 cut(s) 130, 227, 541, 605
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 703
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 3 cut(s) 99, 134, 545
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 470, 557
BstZ17I GTATAC 1 cut(s) 116
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 3 cut(s) 109, 132, 288
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 417, 573
Cac8I GCNNGC 4 cut(s) 130, 227, 541, 605
CaiI CAGNNNCTG 1 cut(s) 329
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 21, 679
EarI CTCTTC 2 cut(s) 21, 679
Eco130I CCWWGG 2 cut(s) 301, 645
Eco147I AGGCCT 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 301, 645
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 2 cut(s) 301, 645
FauNDI CATATG 1 cut(s) 104
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 484, 571
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 484, 571
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 484, 571
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 3 cut(s) 109, 132, 288
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 1 cut(s) 671
HphI GGTGA 3 cut(s) 185, 287, 354
Hpy166II GTNNAC 3 cut(s) 85, 116, 469
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 2 cut(s) 188, 210
Hpy8I GTNNAC 3 cut(s) 85, 116, 469
HpyAV CCTTC 2 cut(s) 207, 377
HpyCH4III ACNGT 4 cut(s) 248, 266, 281, 331
HpyCH4V TGCA 9 cut(s) 93, 128, 295, 494, 553, 573, 587, 603, 693
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 134, 545
HpyF3I CTNAG 1 cut(s) 40
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 2 cut(s) 470, 557
LweI GCATC 1 cut(s) 680
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 260, 275
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 2 cut(s) 8, 666
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 3 cut(s) 54, 290, 358
MluNI TGGCCA 1 cut(s) 288
MlyI GAGTC 1 cut(s) 665
MnlI CCTC 9 cut(s) 22, 55, 169, 330, 457, 498, 503, 506, 735
Mox20I TGGCCA 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 288
MseI TTAA 2 cut(s) 630, 684
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 3 cut(s) 99, 134, 545
NdeI CATATG 1 cut(s) 104
NdeII GATC 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 275
PceI AGGCCT 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 485, 572
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 630, 684
SatI GCNGC 2 cut(s) 484, 571
Sau3AI GATC 1 cut(s) 350
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 70
SetI ASST 8 cut(s) 313, 389, 427, 445, 468, 522, 659, 700
SfaNI GCATC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 3 cut(s) 54, 290, 358
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 2 cut(s) 153, 703
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 2 cut(s) 301, 645
TaaI ACNGT 4 cut(s) 248, 266, 281, 331
TaqI TCGA 1 cut(s) 416
TaqII GACCGA 1 cut(s) 37
TasI AATT 3 cut(s) 54, 290, 358
Tru1I TTAA 2 cut(s) 630, 684
Tru9I TTAA 2 cut(s) 630, 684
TscAI CASTG 2 cut(s) 417, 580
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 483, 570
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 111, 359, 434
TspRI CASTG 2 cut(s) 417, 580
XapI RAATTY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 2 cut(s) 167, 308
XmiI GTMKAC 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.