FvH4_7g22890

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005684
Physical Location & Seq
Reverse (-)
17984597 .. 17985785
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22890.t1

Sequence Viewer

Length: 741 bp
ATGCCAATCTCACAAGTCCTCTGTTTCCTCTGCTTCCTCATCTCCCTCTCCTTCACTGATGGGACTCAACTCATCATAGTGAACAACTGCAAGGACAGCATATGGCCCGGGATCCTCGGCACTGCAGGCCACCCTACTCCTCTAGACGGCGGCTTCCATCTTCCTAGTGGCGAGCAACTCCTTCTTGAAGTTCCTCAAAACTGGTCTGGAAGAATCTGGGGAAGGCAAGGCTGCTGCTTTGATCCAAGCACCGGCAAGGGCTCGTGCCTAACCGGTGATTGTGCCGGCCTCTTACAATGTAGGGGACTCGGTGGAGTTCCCCCTGCCACTCTTGTCGAAATGACACTTGGAACTCCTAAATCCGCCCTGCATTTCTACGATGTGAGCTTGGTTGATGGGTTCAACGTGCCTATTTCTATGGTGCCTATTGGCGGGGGTGTAGGATGTGGTGTTGCTGCTTGTGAGGCTGACTTGAATGTATGCTGCCCGCTTGCCTTGGTCATCAAGAAACGAGGTAGGGTTGTGGGTTGTAAGAGTGCTTGTTTGGCTGCAAAGACAGATAGGTACTGCTGTACTGGGGAGTTTGCAAATCCAAAGAGTTGTAAGCCTAGTGTTTTTGGGCATCTTTTTAAGGCTATTTGCCCCAGGGCTTATAGTTATGCCTTTGATGATTCTACAGGGCTTAAGACATGTGTGGCCCCTAGGTATGTCATCACATTTTGTCCCCCGAACTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

247

Amino Acids

25.96

Weight (kDa)

7.77

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 28 - 242 8.8e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 4 cut(s) 150, 363, 432, 488
AclWI GGATC 3 cut(s) 106, 119, 236
AfaI GTAC 2 cut(s) 566, 574
AfiI CCNNNNNNNGG 4 cut(s) 146, 251, 431, 733
AflII CTTAAG 1 cut(s) 683
AflIII ACRYGT 1 cut(s) 689
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 3 cut(s) 188, 403, 475
AjnI CCWGG 1 cut(s) 644
AjuI GAANNNNNNNTTGG 2 cut(s) 330, 362
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
AlwI GGATC 3 cut(s) 106, 119, 236
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 4 cut(s) 104, 127, 286, 696
ApeKI GCWGC 5 cut(s) 231, 234, 455, 483, 548
AsiGI ACCGGT 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 701
AspS9I GGNCC 2 cut(s) 105, 697
AsuC2I CCSGG 2 cut(s) 108, 109
AsuHPI GGTGA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 107
AvrII CCTAGG 1 cut(s) 701
BaeI ACNNNNGTAYC 2 cut(s) 556, 589
BamHI GGATCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 263
BauI CACGAG 1 cut(s) 262
BbvI GCAGC 5 cut(s) 218, 221, 442, 470, 535
BccI CCATC 3 cut(s) 53, 165, 389
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 646
BcnI CCSGG 2 cut(s) 108, 109
BfaI CTAG 4 cut(s) 143, 165, 609, 702
BfmI CTRYAG 2 cut(s) 123, 675
BfrI CTTAAG 1 cut(s) 683
BisI GCNGC 6 cut(s) 151, 232, 235, 456, 484, 549
BlnI CCTAGG 1 cut(s) 701
BlsI GCNGC 6 cut(s) 152, 233, 236, 457, 485, 550
Bme1390I CCNGG 3 cut(s) 108, 109, 646
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 105, 697
BmiI GGNNCC 3 cut(s) 113, 423, 699
BmrFI CCNGG 3 cut(s) 108, 109, 646
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 585
BpuMI CCSGG 2 cut(s) 108, 109
BsaJI CCNNGG 6 cut(s) 107, 115, 495, 644, 645, 701
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 251, 431, 733
Bse118I RCCGGY 3 cut(s) 251, 272, 284
Bse1I ACTGG 2 cut(s) 206, 580
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 6 cut(s) 107, 115, 495, 644, 645, 701
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 4 cut(s) 146, 251, 431, 733
BseNI ACTGG 2 cut(s) 206, 580
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 5 cut(s) 218, 221, 442, 470, 535
BshFI GGCC 4 cut(s) 106, 129, 288, 698
BshNI GGYRCC 1 cut(s) 421
BshTI ACCGGT 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 108, 252, 273, 285
BslFI GGGAC 3 cut(s) 76, 318, 708
BslI CCNNNNNNNGG 4 cut(s) 146, 251, 431, 733
BsmFI GGGAC 3 cut(s) 76, 318, 708
BsnI GGCC 4 cut(s) 106, 129, 288, 698
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 2 cut(s) 111, 241
BspACI CCGC 4 cut(s) 150, 363, 432, 488
BspANI GGCC 4 cut(s) 106, 129, 288, 698
BspLI GGNNCC 3 cut(s) 113, 423, 699
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 3 cut(s) 106, 119, 236
BspT107I GGYRCC 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 683
BsrFI RCCGGY 3 cut(s) 251, 272, 284
BsrI ACTGG 2 cut(s) 206, 580
BssAI RCCGGY 3 cut(s) 251, 272, 284
BssECI CCNNGG 6 cut(s) 107, 115, 495, 644, 645, 701
BssMI GATC 2 cut(s) 111, 241
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 495, 701
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 646
BstAFI CTTAAG 1 cut(s) 683
BstC8I GCNNGC 5 cut(s) 127, 173, 286, 488, 492
BstF5I GGATG 1 cut(s) 449
BstKTI GATC 2 cut(s) 114, 244
BstMBI GATC 2 cut(s) 111, 241
BstMWI GCNNNNNNNGC 4 cut(s) 96, 126, 464, 545
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 693
BstSCI CCNGG 3 cut(s) 106, 107, 644
BstSFI CTRYAG 2 cut(s) 123, 675
BstV1I GCAGC 5 cut(s) 218, 221, 442, 470, 535
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 4 cut(s) 106, 129, 288, 698
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 54, 120
Cac8I GCNNGC 5 cut(s) 127, 173, 286, 488, 492
Cfr10I RCCGGY 3 cut(s) 251, 272, 284
Cfr13I GGNCC 2 cut(s) 105, 697
Cfr9I CCCGGG 1 cut(s) 107
Csp6I GTAC 2 cut(s) 565, 573
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 1 cut(s) 690
CviQI GTAC 2 cut(s) 565, 573
DpnI GATC 2 cut(s) 113, 243
DpnII GATC 2 cut(s) 111, 241
EciI GGCGGA 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 495, 701
Eco24I GRGCYC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 2 cut(s) 495, 701
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 2 cut(s) 495, 701
FaeI CATG 1 cut(s) 693
FaiI YATR 9 cut(s) 77, 101, 103, 419, 481, 654, 660, 691, 708
FaqI GGGAC 3 cut(s) 76, 318, 708
FatI CATG 1 cut(s) 689
FauI CCCGC 2 cut(s) 425, 495
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 6 cut(s) 151, 232, 235, 456, 484, 549
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 6 cut(s) 151, 232, 235, 456, 484, 549
FspBI CTAG 4 cut(s) 143, 165, 609, 702
GluI GCNGC 6 cut(s) 151, 232, 235, 456, 484, 549
HaeIII GGCC 4 cut(s) 106, 129, 288, 698
HapII CCGG 4 cut(s) 108, 252, 273, 285
Hin1II CATG 1 cut(s) 693
HinfI GANTC 4 cut(s) 64, 213, 306, 671
HpaII CCGG 4 cut(s) 108, 252, 273, 285
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 4 cut(s) 143, 185, 207, 505
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 3 cut(s) 61, 191, 216
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 5 cut(s) 90, 125, 370, 551, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 126, 464, 545
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 693
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 111, 241
Lsp1109I GCAGC 5 cut(s) 218, 221, 442, 470, 535
LweI GCATC 1 cut(s) 631
MaeI CTAG 4 cut(s) 143, 165, 609, 702
MaeII ACGT 1 cut(s) 405
MalI GATC 2 cut(s) 113, 243
MboI GATC 2 cut(s) 111, 241
MboII GAAGA 2 cut(s) 152, 222
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 263
MlyI GAGTC 2 cut(s) 58, 300
MroNI GCCGGC 1 cut(s) 284
MseI TTAA 2 cut(s) 630, 684
MslI CAYNNNNRTG 1 cut(s) 77
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 4 cut(s) 108, 252, 273, 285
MspR9I CCNGG 3 cut(s) 108, 109, 646
MvaI CCWGG 1 cut(s) 646
MwoI GCNNNNNNNGC 4 cut(s) 96, 126, 464, 545
NaeI GCCGGC 1 cut(s) 286
NciI CCSGG 2 cut(s) 108, 109
NdeI CATATG 1 cut(s) 101
NdeII GATC 2 cut(s) 111, 241
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 693
NlaIV GGNNCC 3 cut(s) 113, 423, 699
NmeAIII GCCGAG 1 cut(s) 96
NspI RCATGY 1 cut(s) 693
PasI CCCWGGG 1 cut(s) 645
PciI ACATGT 1 cut(s) 689
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 213, 671
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 6 cut(s) 152, 233, 236, 457, 485, 550
PleI GAGTC 2 cut(s) 58, 300
PpsI GAGTC 2 cut(s) 58, 300
PscI ACATGT 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 113, 423, 699
PspPI GGNCC 2 cut(s) 105, 697
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 2 cut(s) 566, 574
RsaNI GTAC 2 cut(s) 565, 573
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 2 cut(s) 630, 684
SatI GCNGC 6 cut(s) 151, 232, 235, 456, 484, 549
Sau3AI GATC 2 cut(s) 111, 241
Sau96I GGNCC 2 cut(s) 105, 697
SchI GAGTC 2 cut(s) 58, 300
ScrFI CCNGG 3 cut(s) 108, 109, 646
SduI GDGCHC 1 cut(s) 263
SetI ASST 5 cut(s) 389, 408, 517, 566, 707
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 2 cut(s) 123, 675
SmaI CCCGGG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SsiI CCGC 4 cut(s) 150, 363, 432, 488
SspMI CTAG 4 cut(s) 143, 165, 609, 702
StyD4I CCNGG 3 cut(s) 106, 107, 644
StyI CCWWGG 2 cut(s) 495, 701
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 336
TatI WGTACW 1 cut(s) 572
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 213, 671
Tru1I TTAA 2 cut(s) 630, 684
Tru9I TTAA 2 cut(s) 630, 684
TscAI CASTG 2 cut(s) 61, 127
TseI GCWGC 5 cut(s) 231, 234, 455, 483, 548
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 2 cut(s) 61, 127
Vha464I CTTAAG 1 cut(s) 683
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 107
XmaJI CCTAGG 1 cut(s) 701
XspI CTAG 4 cut(s) 143, 165, 609, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.