MD07G1202000.v1.1

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005684
Physical Location & Seq
Reverse (-)
28014091 .. 28014965
875 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1202000.v1.1.491

Sequence Viewer

Length: 747 bp
ATGCCAATCTCGCCTGAAATCTTCTTCCTCCTCTCCTTTCTCATCTCCCTCTCCTTCACAGATGGGACTCAACTCATCATAGTGAACAACTGCAAGGAAAGCATATGGCCCGGAATCCTTGGCAATGCAGGCCACACAACACCTCAAGACGGCGGCTTCCACCTCTCCAGCGGCGAGCAACAAGTCCTTAACGTCCCCGAAAACTGGTCAGGCAGACTATGGGGCAGGCAAGGCTGCTGCTTTGATGAAAAAACCGGCAAAGGCACATGCCAAACGGGTGATTGTGTTGGGCTCTTACAATGCAGGGGACTCGGCGGAGTCCCTCCAGCCACACTCGTTGAAATGACACTCGGAACCTCGAAATCCGCCTTGCATTACTACGATGTGAGTTTGGTTGACGGTTTCAATGTGCCGGTTTCGATGAGGCCAGTAGGTGGTGGTGGCGGTGGTGGGTGTGGAGTTGCTGCCTGTGAGGCTGACTTGAACGTTTGCTGCCCGCTTGCCTTGGTGGTCAAGAAACAAGGTAGGGTTGTGGGGTGCAAGAGCGCTTGCTTGGCCGGGAAATCGGACCGGTATTGCTGCAGAGGGGCGTTTGCGGATCCAGAGAGCTGCAGGCCTACTGTTTTTGGGCATCTTTTTAAGGCTATTTGTCCTAGGGCTTATAGCTACGCCTTTGATGATTCTACAGGGCTTAAGACTTGTTCGGCTCCTAGGTATGTCATTACGTTTTGCCCTCCTAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

249

Amino Acids

26.25

Weight (kDa)

7.81

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 245 3.6e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AciI CCGC 7 cut(s) 153, 171, 315, 366, 444, 497, 596
AclI AACGTT 1 cut(s) 486
AclWI GGATC 2 cut(s) 593, 606
AcoI YGGCCR 1 cut(s) 555
AfeI AGCGCT 1 cut(s) 547
AfiI CCNNNNNNNGG 3 cut(s) 149, 204, 434
AflII CTTAAG 1 cut(s) 692
AgeI ACCGGT 1 cut(s) 570
AgsI TTSAA 3 cut(s) 341, 406, 484
AluBI AGCT 2 cut(s) 609, 666
AluI AGCT 2 cut(s) 609, 666
AlwI GGATC 2 cut(s) 593, 606
Aor51HI AGCGCT 1 cut(s) 547
AoxI GGCC 5 cut(s) 107, 130, 425, 555, 614
ApeKI GCWGC 6 cut(s) 234, 237, 464, 492, 579, 609
AsiGI ACCGGT 1 cut(s) 570
AspA2I CCTAGG 2 cut(s) 653, 710
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 108, 568
AsuC2I CCSGG 2 cut(s) 111, 559
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 568
AvrII CCTAGG 2 cut(s) 653, 710
BamHI GGATCC 1 cut(s) 598
BanII GRGCYC 1 cut(s) 294
BbvI GCAGC 6 cut(s) 221, 224, 451, 479, 566, 596
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BcnI CCSGG 2 cut(s) 111, 559
BfaI CTAG 2 cut(s) 654, 711
BfmI CTRYAG 3 cut(s) 580, 610, 684
BfoI RGCGCY 1 cut(s) 549
BfrI CTTAAG 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 8 cut(s) 154, 172, 235, 238, 465, 493, 580, 610
BlnI CCTAGG 2 cut(s) 653, 710
BlsI GCNGC 8 cut(s) 155, 173, 236, 239, 466, 494, 581, 611
Bme1390I CCNGG 2 cut(s) 111, 559
Bme18I GGWCC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 108, 568
BmiI GGNNCC 3 cut(s) 355, 600, 708
BmrFI CCNGG 2 cut(s) 111, 559
BmsI GCATC 1 cut(s) 640
BpmI CTGGAG 2 cut(s) 151, 309
BpuEI CTTGAG 1 cut(s) 129
BpuMI CCSGG 2 cut(s) 111, 559
BsaJI CCNNGG 4 cut(s) 118, 504, 653, 710
BsaWI WCCGGW 1 cut(s) 570
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 204, 434
Bse118I RCCGGY 3 cut(s) 254, 412, 570
Bse1I ACTGG 2 cut(s) 209, 428
Bse3DI GCAATG 1 cut(s) 130
BseDI CCNNGG 4 cut(s) 118, 504, 653, 710
BseLI CCNNNNNNNGG 3 cut(s) 149, 204, 434
BseMI GCAATG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 209, 428
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 6 cut(s) 221, 224, 451, 479, 566, 596
BshFI GGCC 5 cut(s) 109, 132, 427, 557, 616
BshTI ACCGGT 1 cut(s) 570
BsiSI CCGG 5 cut(s) 111, 255, 413, 558, 571
BslFI GGGAC 4 cut(s) 79, 179, 305, 321
BslI CCNNNNNNNGG 3 cut(s) 149, 204, 434
BsmFI GGGAC 4 cut(s) 79, 179, 305, 321
BsnI GGCC 5 cut(s) 109, 132, 427, 557, 616
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 7 cut(s) 153, 171, 315, 366, 444, 497, 596
BspANI GGCC 5 cut(s) 109, 132, 427, 557, 616
BspLI GGNNCC 3 cut(s) 355, 600, 708
BspMAI CTGCAG 2 cut(s) 584, 614
BspPI GGATC 2 cut(s) 593, 606
BspTI CTTAAG 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 3 cut(s) 254, 412, 570
BsrI ACTGG 2 cut(s) 209, 428
BssAI RCCGGY 3 cut(s) 254, 412, 570
BssECI CCNNGG 4 cut(s) 118, 504, 653, 710
BssMI GATC 1 cut(s) 598
BssT1I CCWWGG 4 cut(s) 118, 504, 653, 710
Bst4CI ACNGT 2 cut(s) 401, 622
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 7 cut(s) 130, 176, 227, 497, 501, 550, 614
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 1 cut(s) 601
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 6 cut(s) 10, 99, 129, 231, 473, 554
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 109, 557
BstSFI CTRYAG 3 cut(s) 580, 610, 684
BstV1I GCAGC 6 cut(s) 221, 224, 451, 479, 566, 596
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 5 cut(s) 109, 132, 427, 557, 616
Cac8I GCNNGC 7 cut(s) 130, 176, 227, 497, 501, 550, 614
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 3 cut(s) 254, 412, 570
Cfr13I GGNCC 2 cut(s) 108, 568
CpoI CGGWCCG 1 cut(s) 568
CspAI ACCGGT 1 cut(s) 570
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CspI CGGWCCG 1 cut(s) 568
CviAII CATG 1 cut(s) 267
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 555
EciI GGCGGA 2 cut(s) 330, 355
Eco130I CCWWGG 4 cut(s) 118, 504, 653, 710
Eco147I AGGCCT 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 568
Eco47III AGCGCT 1 cut(s) 547
EcoT14I CCWWGG 4 cut(s) 118, 504, 653, 710
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 4 cut(s) 118, 504, 653, 710
FaeI CATG 1 cut(s) 270
FaiI YATR 7 cut(s) 80, 104, 106, 220, 268, 663, 717
FaqI GGGAC 4 cut(s) 79, 179, 305, 321
FatI CATG 1 cut(s) 266
FauI CCCGC 1 cut(s) 504
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 8 cut(s) 154, 172, 235, 238, 465, 493, 580, 610
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 8 cut(s) 154, 172, 235, 238, 465, 493, 580, 610
FspBI CTAG 2 cut(s) 654, 711
GlaI GCGC 1 cut(s) 547
GluI GCNGC 8 cut(s) 154, 172, 235, 238, 465, 493, 580, 610
GsuI CTGGAG 2 cut(s) 151, 309
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 5 cut(s) 109, 132, 427, 557, 616
HapII CCGG 5 cut(s) 111, 255, 413, 558, 571
HhaI GCGC 1 cut(s) 548
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 5 cut(s) 67, 114, 309, 318, 680
HpaII CCGG 5 cut(s) 111, 255, 413, 558, 571
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 85, 397
Hpy188I TCNGA 2 cut(s) 353, 568
Hpy188III TCNNGA 3 cut(s) 146, 514, 602
Hpy8I GTNNAC 2 cut(s) 85, 397
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 401, 622
HpyCH4IV ACGT 3 cut(s) 192, 486, 725
HpyCH4V TGCA 7 cut(s) 93, 128, 303, 373, 540, 582, 612
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 99, 129, 231, 473, 554
HpySE526I ACGT 3 cut(s) 192, 486, 725
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 6 cut(s) 221, 224, 451, 479, 566, 596
LweI GCATC 1 cut(s) 640
MaeI CTAG 2 cut(s) 654, 711
MaeII ACGT 3 cut(s) 192, 486, 725
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 2 cut(s) 13, 16
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 3 cut(s) 61, 303, 327
MseI TTAA 3 cut(s) 189, 639, 693
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 171
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 5 cut(s) 111, 255, 413, 558, 571
MspR9I CCNGG 2 cut(s) 111, 559
MwoI GCNNNNNNNGC 6 cut(s) 10, 99, 129, 231, 473, 554
NciI CCSGG 2 cut(s) 111, 559
NdeI CATATG 1 cut(s) 104
NdeII GATC 1 cut(s) 598
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 3 cut(s) 355, 600, 708
NmeAIII GCCGAG 1 cut(s) 291
NspI RCATGY 1 cut(s) 270
PceI AGGCCT 1 cut(s) 616
PfeI GAWTC 2 cut(s) 114, 680
PflMI CCANNNNNTGG 1 cut(s) 434
PinAI ACCGGT 1 cut(s) 570
PkrI GCNGC 8 cut(s) 155, 173, 236, 239, 466, 494, 581, 611
PleI GAGTC 3 cut(s) 61, 303, 326
PpsI GAGTC 3 cut(s) 61, 303, 326
Psp1406I AACGTT 1 cut(s) 486
PspN4I GGNNCC 3 cut(s) 355, 600, 708
PspPI GGNCC 2 cut(s) 108, 568
PstI CTGCAG 2 cut(s) 584, 614
PsuI RGATCY 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 80
Rsr2I CGGWCCG 1 cut(s) 568
RsrII CGGWCCG 1 cut(s) 568
SaqAI TTAA 3 cut(s) 189, 639, 693
SatI GCNGC 8 cut(s) 154, 172, 235, 238, 465, 493, 580, 610
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 2 cut(s) 108, 568
SchI GAGTC 3 cut(s) 61, 303, 327
ScrFI CCNGG 2 cut(s) 111, 559
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 3 cut(s) 580, 610, 684
SinI GGWCC 1 cut(s) 568
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 144, 692
SmoI CTYRAG 2 cut(s) 144, 692
SseBI AGGCCT 1 cut(s) 616
SsiI CCGC 7 cut(s) 153, 171, 315, 366, 444, 497, 596
SspI AATATT 1 cut(s) 743
SspMI CTAG 2 cut(s) 654, 711
StuI AGGCCT 1 cut(s) 616
StyD4I CCNGG 2 cut(s) 109, 557
StyI CCWWGG 4 cut(s) 118, 504, 653, 710
TaaI ACNGT 2 cut(s) 401, 622
TaiI ACGT 3 cut(s) 195, 489, 728
TaqI TCGA 2 cut(s) 359, 419
TauI GCSGC 2 cut(s) 156, 174
TfiI GAWTC 2 cut(s) 114, 680
Tru1I TTAA 3 cut(s) 189, 639, 693
Tru9I TTAA 3 cut(s) 189, 639, 693
TseI GCWGC 6 cut(s) 234, 237, 464, 492, 579, 609
TspDTI ATGAA 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 434
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 568
XceI RCATGY 1 cut(s) 270
XmaJI CCTAGG 2 cut(s) 653, 710
XspI CTAG 2 cut(s) 654, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.