RLG00000027243

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005684
Physical Location & Seq
Forward (+)
9900677 .. 9901511
835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027243

Sequence Viewer

Length: 741 bp
ATGCCAATCTCACAAGTCCTCTGTTTCCTCTGCTTCCTCATCTCCCTCTCCTTCACTGATGGGACTCAACTCATCATAGTGAACAACTGCAAGGAGAGCATATGGCCCGGGATCCTCGGCACTGCAGGCCACCTGACTCCTCAAGACGGCGGCTTCCATCTCCCCAGCGGCCAGCAACTCCTCCTTGACGTCCCTGAGAACTGGTCCGGAAGAATTTGGGCGAGGCAAGGCTGCTGCTTTGATCCAAGCACTGGCAAGGGCTCGTGCCTAACCGGTGGTTGCGCCGGGCTCTTACAATGTAGGGGACTCGGTGGAGTCCCCCCTGCCACACTCGTCGAAATGACACTCGGAACTCCTAAATCTGCCTTGCATTTCTACGATGTGAGCCTGGTTGATGGTTTCAACGTTCCCATTTCCATGGTGCCGATTGGTGGTGGTGTTGGATGTGGTGTTGCTGCTTGTGAGACTGACTTGAATGTATGCTGTCCCCTTGCCTTGGTGGTCAAGAAACAAGGTCGGGTTGTGGGTTGTAAGAGTGCTTGTTTGGCTGCAAAGACAGATAGGTATTGCTGTACTGGGGAGTTTGCAGATCCAAAGAGTTGTAAGCCTAGTGTTTTTGGGCATCTTTTTAAGGCTATTTGTCCCAAGGCTTATAGTTATGCCTTTGATGATTCTACAGGGCTGAAGACCTGTGTGGCTCCTACGTATGTCATCACATTTTGTCCCCCTAACTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

247

Amino Acids

25.78

Weight (kDa)

7.35

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 28 - 242 4.6e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 2 cut(s) 150, 168
AclI AACGTT 1 cut(s) 405
AclWI GGATC 4 cut(s) 106, 119, 236, 584
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 704
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 2 cut(s) 403, 475
AjnI CCWGG 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 4 cut(s) 106, 119, 236, 584
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 104, 127, 169
ApeKI GCWGC 4 cut(s) 231, 234, 455, 548
ApoI RAATTY 1 cut(s) 213
AsiGI ACCGGT 1 cut(s) 272
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 105, 204
AsuC2I CCSGG 3 cut(s) 108, 109, 286
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 2 cut(s) 263, 291
BauI CACGAG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 692
BbvI GCAGC 4 cut(s) 218, 221, 442, 535
BccI CCATC 3 cut(s) 53, 165, 389
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 389
BcnI CCSGG 3 cut(s) 108, 109, 286
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 2 cut(s) 123, 675
BisI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
BlsI GCNGC 6 cut(s) 152, 170, 233, 236, 457, 550
Bme1390I CCNGG 4 cut(s) 108, 109, 286, 389
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 105, 204
BmiI GGNNCC 3 cut(s) 113, 423, 699
BmrFI CCNGG 4 cut(s) 108, 109, 286, 389
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 3 cut(s) 108, 109, 286
BsaAI YACGTR 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 5 cut(s) 107, 115, 417, 495, 645
BsaWI WCCGGW 2 cut(s) 206, 272
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 206, 256, 580
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 5 cut(s) 107, 115, 417, 495, 645
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 206, 256, 580
BseRI GAGGAG 2 cut(s) 129, 170
BseXI GCAGC 4 cut(s) 218, 221, 442, 535
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 106, 129, 171
BshNI GGYRCC 1 cut(s) 421
BshTI ACCGGT 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 108, 207, 273, 285
BslFI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
BslI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
BsnI GGCC 3 cut(s) 106, 129, 171
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 263, 291
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 111, 241, 589
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 2 cut(s) 150, 168
BspANI GGCC 3 cut(s) 106, 129, 171
BspCNI CTCAG 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 113, 423, 699
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 4 cut(s) 106, 119, 236, 584
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 3 cut(s) 206, 256, 580
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 5 cut(s) 107, 115, 417, 495, 645
BssMI GATC 3 cut(s) 111, 241, 589
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 3 cut(s) 417, 495, 645
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 127, 173
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 3 cut(s) 114, 244, 592
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 111, 241, 589
BstMWI GCNNNNNNNGC 3 cut(s) 96, 126, 545
BstNI CCWGG 1 cut(s) 389
BstSCI CCNGG 4 cut(s) 106, 107, 284, 387
BstSFI CTRYAG 2 cut(s) 123, 675
BstSNI TACGTA 1 cut(s) 705
BstV1I GCAGC 4 cut(s) 218, 221, 442, 535
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 2 cut(s) 111, 589
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 2 cut(s) 111, 589
BsuRI GGCC 3 cut(s) 106, 129, 171
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 54, 120, 249
Cac8I GCNNGC 2 cut(s) 127, 173
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 105, 204
Cfr9I CCCGGG 1 cut(s) 107
Csp6I GTAC 1 cut(s) 573
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 113, 243, 591
DpnII GATC 3 cut(s) 111, 241, 589
EaeI YGGCCR 1 cut(s) 169
Eco105I TACGTA 1 cut(s) 705
Eco130I CCWWGG 3 cut(s) 417, 495, 645
Eco24I GRGCYC 2 cut(s) 263, 291
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 704
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 3 cut(s) 417, 495, 645
EcoT38I GRGCYC 2 cut(s) 263, 291
ErhI CCWWGG 3 cut(s) 417, 495, 645
FaeI CATG 1 cut(s) 421
FaiI YATR 8 cut(s) 77, 101, 103, 419, 481, 654, 660, 708
FaqI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
FatI CATG 1 cut(s) 417
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 2 cut(s) 263, 291
Fsp4HI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
FspBI CTAG 1 cut(s) 609
GlaI GCGC 1 cut(s) 283
GluI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 106, 129, 171
HapII CCGG 4 cut(s) 108, 207, 273, 285
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 5 cut(s) 64, 136, 306, 315, 671
HpaII CCGG 4 cut(s) 108, 207, 273, 285
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 3 cut(s) 143, 207, 505
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 3 cut(s) 189, 405, 704
HpyCH4V TGCA 5 cut(s) 90, 125, 370, 551, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 126, 545
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 3 cut(s) 189, 405, 704
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 3 cut(s) 111, 241, 589
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 4 cut(s) 218, 221, 442, 535
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 609
MaeII ACGT 3 cut(s) 189, 405, 704
MalI GATC 3 cut(s) 113, 243, 591
MboI GATC 3 cut(s) 111, 241, 589
MboII GAAGA 2 cut(s) 222, 697
MflI RGATCY 2 cut(s) 111, 589
MhlI GDGCHC 2 cut(s) 263, 291
MluCI AATT 1 cut(s) 213
MlyI GAGTC 4 cut(s) 58, 130, 300, 324
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 8 cut(s) 29, 38, 47, 56, 125, 150, 191, 216
MroI TCCGGA 1 cut(s) 206
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 2 cut(s) 77, 416
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 108, 207, 273, 285
MspR9I CCNGG 4 cut(s) 108, 109, 286, 389
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 96, 126, 545
NciI CCSGG 3 cut(s) 108, 109, 286
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 101
NdeII GATC 3 cut(s) 111, 241, 589
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 3 cut(s) 113, 423, 699
NmeAIII GCCGAG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 6 cut(s) 152, 170, 233, 236, 457, 550
PleI GAGTC 4 cut(s) 58, 130, 300, 323
PpsI GAGTC 4 cut(s) 58, 130, 300, 323
Ppu21I YACGTR 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 113, 423, 699
PspPI GGNCC 2 cut(s) 105, 204
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 2 cut(s) 111, 589
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 2 cut(s) 77, 416
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
Sau3AI GATC 3 cut(s) 111, 241, 589
Sau96I GGNCC 2 cut(s) 105, 204
SchI GAGTC 4 cut(s) 58, 130, 300, 324
ScrFI CCNGG 4 cut(s) 108, 109, 286, 389
SduI GDGCHC 2 cut(s) 263, 291
SetI ASST 7 cut(s) 135, 192, 408, 517, 566, 692, 707
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 2 cut(s) 123, 675
SinI GGWCC 1 cut(s) 204
SmaI CCCGGG 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 77, 416
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SnaBI TACGTA 1 cut(s) 705
Sse9I AATT 1 cut(s) 213
SsiI CCGC 2 cut(s) 150, 168
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 4 cut(s) 106, 107, 284, 387
StyI CCWWGG 3 cut(s) 417, 495, 645
TaiI ACGT 3 cut(s) 192, 408, 707
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 572
TauI GCSGC 2 cut(s) 153, 171
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 3 cut(s) 61, 127, 256
TseI GCWGC 4 cut(s) 231, 234, 455, 548
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 3 cut(s) 61, 127, 256
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 213
XmaI CCCGGG 1 cut(s) 107
XspI CTAG 1 cut(s) 609
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.