pycom12g13970

Thaumatin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0005684
Physical Location & Seq
Reverse (-)
16420537 .. 16422046
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13970.1

Sequence Viewer

Length: 1008 bp
ATGTGTGATGTCCGAAATTGCCACCTTTACTGCACTGTGTCCTCGTTTCTTTGGGTTTCTAATTGTGTTTTCTTGTTTCCGCTTCTTGTTTCAGATGGGGCTCAACTGATTCTAGTGAACAACTGCAATGAAAGCATATGGCCCGGTATACTCGGCAGTGCAGGCGTAGACACTCCTCAAAGCGGCGGTTTCCATCTTGGCAGCGGCGAGGAGTCAGTTCTTGATGTACCTGAGAAGTGGTCAGGAAGAATATGGGGCAGGCAGGGTTGCTCCTTTGACAGTAATGGAAAAGGAAACTGTGAGACCGGCGATTGTTTTGGCCAATTGCATTGCCAAGGAAAAGGAGGCGTGCCTCCAGCGACCGTGGTTGAAATGACGCTGGGAACATCAACTTCACCCCTGCATTTCTATGATGTGAGTTTGGTTGATGGCTTTAACTTGCCCGTGTCAATGAAGCCGGTTGGTGGGGGAATAGGGTGCGGTGTTGCCTCATGCGAGGTTGATTTGAACGTGTGCTGCCCATCTGCGTTGGAAGTGAGGAGAGGAGGCAGGGTGGTCGGGTGTAAGAGTGCCTGCTTGGCTATGCAGTCTGCGAAGTATTGCTGCACAGGAAGCTACGCAAACCCAAACACTTGCAAACCGACCCTTTTCGCACATCTGTTTAAGGCCATATGCCCCAAGGCTTATAGTTATGCCTTTGATGACTCCTCCAGCCTTAACAAATGCCGTGCTTCGCGGTATGTCATCACTTTCTGGAACATGGGTTCATCCACAGATGTAGCACTCGTGCAAGAGGAGGTTGTAGTGCCCCCGACTTTTGGCTCGTCTCTGCGGACACCAAATGTTTTGGAAATAGCAAAGATCAACTCTTTGCACGTCCCTGAAAGATGCCTTCTTAAGAATCAATGCCGAAGAGCGTGGATCATATGTGTCAGCTTTCTTCGGAGATTCCTACCGTTGATTTCTCTCTGCTTTCAAGTGGGAACACGGAGGAGCTTACCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

336

Amino Acids

36.15

Weight (kDa)

8.13

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 40 - 251 1.3e-79 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 148, 168
AccII CGCG 1 cut(s) 736
AciI CCGC 7 cut(s) 80, 183, 186, 204, 480, 736, 832
AclWI GGATC 1 cut(s) 929
AcoI YGGCCR 1 cut(s) 319
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 182, 464, 818
AflII CTTAAG 1 cut(s) 896
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 3 cut(s) 371, 508, 977
AjiI CACGTC 1 cut(s) 877
AloI GAACNNNNNNTCC 2 cut(s) 748, 780
AluBI AGCT 3 cut(s) 615, 936, 996
AluI AGCT 3 cut(s) 615, 936, 996
Alw26I GTCTC 2 cut(s) 296, 831
AlwI GGATC 1 cut(s) 929
AoxI GGCC 3 cut(s) 140, 319, 666
ApeKI GCWGC 3 cut(s) 201, 516, 603
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 810
BalI TGGCCA 1 cut(s) 321
BanII GRGCYC 1 cut(s) 103
BauI CACGAG 1 cut(s) 785
BbvI GCAGC 3 cut(s) 213, 503, 590
BccI CCATC 4 cut(s) 89, 201, 422, 529
BceAI ACGGC 1 cut(s) 711
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 296, 831
BfaI CTAG 2 cut(s) 113, 1006
BfrI CTTAAG 1 cut(s) 896
BglI GCCNNNNNGGC 1 cut(s) 578
BisI GCNGC 5 cut(s) 184, 202, 205, 517, 604
BlsI GCNGC 5 cut(s) 185, 203, 206, 518, 605
Bme1390I CCNGG 1 cut(s) 144
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 878
BpmI CTGGAG 2 cut(s) 339, 694
BpuMI CCSGG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 334, 363, 678
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 464, 818
Bse118I RCCGGY 2 cut(s) 305, 457
Bse3DI GCAATG 2 cut(s) 133, 328
BseDI CCNNGG 3 cut(s) 334, 363, 678
BseGI GGATG 1 cut(s) 767
BseLI CCNNNNNNNGG 3 cut(s) 182, 464, 818
BseMI GCAATG 2 cut(s) 133, 328
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 7 cut(s) 165, 224, 553, 558, 697, 809, 1006
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 3 cut(s) 213, 503, 590
BseYI CCCAGC 1 cut(s) 379
BsgI GTGCAG 3 cut(s) 16, 180, 589
Bsh1236I CGCG 1 cut(s) 736
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 142, 321, 668
BsiEI CGRYCG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 144, 306, 458
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 3 cut(s) 182, 464, 818
BsmAI GTCTC 2 cut(s) 296, 831
BsmBI CGTCTC 1 cut(s) 831
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 3 cut(s) 142, 321, 668
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 103, 810
Bsp143I GATC 2 cut(s) 861, 921
BspACI CCGC 7 cut(s) 80, 183, 186, 204, 480, 736, 832
BspANI GGCC 3 cut(s) 142, 321, 668
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 736
BspPI GGATC 1 cut(s) 929
BspQI GCTCTTC 1 cut(s) 907
BspTI CTTAAG 1 cut(s) 896
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 133, 328
BsrFI RCCGGY 2 cut(s) 305, 457
BssAI RCCGGY 2 cut(s) 305, 457
BssECI CCNNGG 3 cut(s) 334, 363, 678
BssMI GATC 2 cut(s) 861, 921
BssNAI GTATAC 1 cut(s) 149
BssSI CACGAG 1 cut(s) 785
BssT1I CCWWGG 2 cut(s) 334, 678
Bst1107I GTATAC 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 785
Bst4CI ACNGT 5 cut(s) 37, 281, 299, 364, 957
Bst6I CTCTTC 1 cut(s) 907
BstAFI CTTAAG 1 cut(s) 896
BstC8I GCNNGC 4 cut(s) 163, 260, 350, 574
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 767
BstFNI CGCG 1 cut(s) 736
BstKTI GATC 2 cut(s) 864, 924
BstMAI GTCTC 2 cut(s) 296, 831
BstMBI GATC 2 cut(s) 861, 921
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 4 cut(s) 132, 162, 578, 612
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 1 cut(s) 736
BstV1I GCAGC 3 cut(s) 213, 503, 590
BstZ17I GTATAC 1 cut(s) 149
BsuRI GGCC 3 cut(s) 142, 321, 668
BtgI CCRYGG 1 cut(s) 363
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 1 cut(s) 767
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 33, 163
Cac8I GCNNGC 4 cut(s) 163, 260, 350, 574
Cfr10I RCCGGY 2 cut(s) 305, 457
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 492, 760
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 863, 923
DpnII GATC 2 cut(s) 861, 921
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 907
EarI CTCTTC 1 cut(s) 907
Eco130I CCWWGG 2 cut(s) 334, 678
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 296
EcoT14I CCWWGG 2 cut(s) 334, 678
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 334, 678
Esp3I CGTCTC 1 cut(s) 831
FaeI CATG 2 cut(s) 495, 763
FaqI GGGAC 1 cut(s) 863
FatI CATG 2 cut(s) 491, 759
FauNDI CATATG 3 cut(s) 137, 671, 926
FblI GTMKAC 2 cut(s) 148, 168
Fnu4HI GCNGC 5 cut(s) 184, 202, 205, 517, 604
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 5 cut(s) 184, 202, 205, 517, 604
FspBI CTAG 2 cut(s) 113, 1006
GluI GCNGC 5 cut(s) 184, 202, 205, 517, 604
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 2 cut(s) 339, 694
HaeIII GGCC 3 cut(s) 142, 321, 668
HapII CCGG 3 cut(s) 144, 306, 458
HgaI GACGC 1 cut(s) 385
Hin1II CATG 2 cut(s) 495, 763
HinfI GANTC 5 cut(s) 109, 212, 704, 901, 948
HpaII CCGG 3 cut(s) 144, 306, 458
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 3 cut(s) 118, 149, 169
Hpy188I TCNGA 3 cut(s) 14, 94, 945
Hpy188III TCNNGA 3 cut(s) 221, 243, 754
Hpy8I GTNNAC 3 cut(s) 118, 149, 169
HpyAV CCTTC 1 cut(s) 902
HpyCH4III ACNGT 5 cut(s) 37, 281, 299, 364, 957
HpyCH4IV ACGT 2 cut(s) 510, 876
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 162, 578, 612
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 510, 876
Hsp92II CATG 2 cut(s) 495, 763
Kzo9I GATC 2 cut(s) 861, 921
LguI GCTCTTC 1 cut(s) 907
LmnI GCTCC 2 cut(s) 275, 993
Lsp1109I GCAGC 3 cut(s) 213, 503, 590
LweI GCATC 1 cut(s) 878
MaeI CTAG 2 cut(s) 113, 1006
MaeII ACGT 2 cut(s) 510, 876
MalI GATC 2 cut(s) 863, 923
MboI GATC 2 cut(s) 861, 921
MboII GAAGA 3 cut(s) 258, 924, 932
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 103, 810
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 3 cut(s) 16, 61, 323
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 2 cut(s) 221, 698
MmeI TCCRAC 1 cut(s) 510
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 4 cut(s) 435, 663, 717, 897
MslI CAYNNNNRTG 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 204
MspCI CTTAAG 1 cut(s) 896
MspI CCGG 3 cut(s) 144, 306, 458
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 323
MvnI CGCG 1 cut(s) 736
MwoI GCNNNNNNNGC 4 cut(s) 132, 162, 578, 612
NciI CCSGG 1 cut(s) 144
NdeI CATATG 3 cut(s) 137, 671, 926
NdeII GATC 2 cut(s) 861, 921
NlaIII CATG 2 cut(s) 495, 763
NmeAIII GCCGAG 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 907
PfeI GAWTC 3 cut(s) 109, 901, 948
PkrI GCNGC 5 cut(s) 185, 203, 206, 518, 605
PleI GAGTC 2 cut(s) 220, 698
PpsI GAGTC 2 cut(s) 220, 698
PspFI CCCAGC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 907
SaqAI TTAA 4 cut(s) 435, 663, 717, 897
SatI GCNGC 5 cut(s) 184, 202, 205, 517, 604
Sau3AI GATC 2 cut(s) 861, 921
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 2 cut(s) 221, 698
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 2 cut(s) 103, 810
SetI ASST 9 cut(s) 27, 232, 501, 513, 617, 801, 879, 938, 998
SfaNI GCATC 1 cut(s) 878
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
Sse9I AATT 3 cut(s) 16, 61, 323
SsiI CCGC 7 cut(s) 80, 183, 186, 204, 480, 736, 832
SspMI CTAG 2 cut(s) 113, 1006
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 2 cut(s) 334, 678
TaaI ACNGT 5 cut(s) 37, 281, 299, 364, 957
TaiI ACGT 2 cut(s) 513, 879
TasI AATT 3 cut(s) 16, 61, 323
TauI GCSGC 2 cut(s) 186, 207
TfiI GAWTC 3 cut(s) 109, 901, 948
Tru1I TTAA 4 cut(s) 435, 663, 717, 897
Tru9I TTAA 4 cut(s) 435, 663, 717, 897
TscAI CASTG 2 cut(s) 40, 163
TseI GCWGC 3 cut(s) 201, 516, 603
TspDTI ATGAA 3 cut(s) 144, 467, 756
TspGWI ACGGA 1 cut(s) 1003
TspRI CASTG 2 cut(s) 40, 163
Vha464I CTTAAG 1 cut(s) 896
XmiI GTMKAC 2 cut(s) 148, 168
XspI CTAG 2 cut(s) 113, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.