Rorug03G0079600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000451
Physical Location & Seq
Forward (+)
6217705 .. 6219719
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0079600.1

Sequence Viewer

Length: 903 bp
ATGGCAAGGTTGGTGATGATGCAGCAGCACCAACAGCACAGTCCACCTTCCTTCTCTCCTCTTCCTTCTCTCTCTGACTTTAATGGCACCAGACTTCAAACTCAACTCCAGTATAGGAGAAAGGTATCACAGCTAAAAGAAGCATTACATGTTGCAGCATCAAATGTAAAGAAGACTCTTACTGTGAGCCTCACTGAGCAAATGTCAGGTGCATCAAATAAGGGTAGTGCTGATTTTTCGTCCAAGACTAAAGATTTTGCAGTTCCTAGGAGGAATGCAATGGCCTTAATCTTGTCAGGTTGCATCTTCTCTCAAGTCAGTTTGCAAAGTCCTGCATTTGCTCAACAAACTGTTGCGTTGAGGGAGTACATAGATAGTTTTGATGGCTACTCATTCAAGTACCCTAAGAATTGGATTCAAGTCAAAGGTGCTGGAGCTGACATTTTCTTTAGAGACCCTTATATTCTTGATGAAAACCTAGCTGTGGATTTGTCCTCTCCTTCATCCTCGAATTACAAGAGCGTCGAAGATCTGGGTCCGCCAGAAGTAGCCGCAAAGCAAGTGCTTAGGCAGTATCTGACTGAGTTCATGTCTACAAGACTCGGGGTGAAGCGTGAGGGGAAAGTTCTTTCTACATCTTCAAGGGTTGCTGATGACGGGAAACTTTATTACCAAGTTGAGGTGAACATAAAATCATATGCAAGCAACAATGAACTGGCTGTTATGCCGAAAGATCGTGTGGTTAGTATGGAATGGAACAGGAGGTACCTAACTGTTCTAGGAGTTGAAAACAACCAGTTGTATGCGTTGAGATTACAGACACCAGAAAATGTATTTGTGGAAGAAGAAAGTGATCTTCGCCGGGTTATGGAATCATTTAGAGTGAACAAGGTGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

300

Amino Acids

33.79

Weight (kDa)

9.23

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 120 - 295 1.1e-36 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 765
AccB1I GGYRCC 2 cut(s) 86, 765
AccI GTMKAC 1 cut(s) 593
AciI CCGC 2 cut(s) 539, 552
AfaI GTAC 3 cut(s) 368, 401, 767
AfiI CCNNNNNNNGG 3 cut(s) 484, 679, 868
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 5 cut(s) 98, 397, 419, 642, 788
AluBI AGCT 3 cut(s) 133, 437, 482
AluI AGCT 3 cut(s) 133, 437, 482
Alw26I GTCTC 1 cut(s) 447
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 4 cut(s) 22, 25, 155, 896
Asp718I GGTACC 1 cut(s) 765
AspA2I CCTAGG 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 3 cut(s) 25, 619, 694
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 1 cut(s) 536
AvrII CCTAGG 1 cut(s) 266
BanI GGYRCC 2 cut(s) 86, 765
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 34, 37, 167, 883
BccI CCATC 1 cut(s) 377
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 3 cut(s) 267, 479, 779
BglII AGATCT 1 cut(s) 529
BisI GCNGC 5 cut(s) 23, 26, 156, 552, 897
BlnI CCTAGG 1 cut(s) 266
BlsI GCNGC 5 cut(s) 24, 27, 157, 553, 898
Bme1390I CCNGG 1 cut(s) 863
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 3 cut(s) 88, 537, 767
BmrFI CCNGG 1 cut(s) 863
BmsI GCATC 4 cut(s) 9, 167, 221, 312
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 2 cut(s) 92, 453
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 3 cut(s) 484, 679, 868
Bse1I ACTGG 3 cut(s) 109, 720, 796
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 3 cut(s) 484, 679, 868
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 186, 573
BseNI ACTGG 3 cut(s) 109, 720, 796
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 34, 37, 167, 883
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 2 cut(s) 86, 765
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 1 cut(s) 862
BslI CCNNNNNNNGG 3 cut(s) 484, 679, 868
BsmAI GTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 602
Bsp143I GATC 3 cut(s) 529, 733, 853
BspACI CCGC 2 cut(s) 539, 552
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 2 cut(s) 187, 574
BspLI GGNNCC 3 cut(s) 88, 537, 767
BspT107I GGYRCC 2 cut(s) 86, 765
BspTNI GGTCTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 3 cut(s) 109, 720, 796
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 3 cut(s) 529, 733, 853
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 41, 184, 352, 775
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 4 cut(s) 195, 405, 566, 582
BstF5I GGATG 1 cut(s) 503
BstKTI GATC 3 cut(s) 532, 736, 856
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 3 cut(s) 529, 733, 853
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 861
BstV1I GCAGC 4 cut(s) 34, 37, 167, 883
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 703
CaiI CAGNNNCTG 1 cut(s) 577
Cfr13I GGNCC 1 cut(s) 536
CseI GACGC 1 cut(s) 511
Csp6I GTAC 3 cut(s) 367, 400, 766
CviAII CATG 2 cut(s) 149, 589
CviJI RGCY 9 cut(s) 133, 189, 284, 387, 437, 482, 551, 719, 896
CviKI_1 RGCY 9 cut(s) 133, 189, 284, 387, 437, 482, 551, 719, 896
CviQI GTAC 3 cut(s) 367, 400, 766
DdeI CTNAG 4 cut(s) 195, 405, 566, 582
DpnI GATC 3 cut(s) 531, 735, 855
DpnII GATC 3 cut(s) 529, 733, 853
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 602
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 152, 592
FatI CATG 2 cut(s) 148, 588
FauNDI CATATG 1 cut(s) 697
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 5 cut(s) 23, 26, 156, 552, 897
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 5 cut(s) 23, 26, 156, 552, 897
FspBI CTAG 3 cut(s) 267, 479, 779
GluI GCNGC 5 cut(s) 23, 26, 156, 552, 897
GsuI CTGGAG 2 cut(s) 92, 453
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 862
HgaI GACGC 1 cut(s) 511
Hin1II CATG 2 cut(s) 152, 592
HinfI GANTC 4 cut(s) 175, 415, 600, 872
HpaII CCGG 1 cut(s) 862
HphI GGTGA 3 cut(s) 25, 619, 694
Hpy166II GTNNAC 4 cut(s) 44, 594, 685, 886
Hpy188I TCNGA 2 cut(s) 76, 579
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 4 cut(s) 44, 594, 685, 886
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 4 cut(s) 57, 61, 75, 510
HpyCH4III ACNGT 4 cut(s) 41, 184, 352, 775
HpyCH4V TGCA 9 cut(s) 22, 155, 212, 260, 278, 303, 325, 335, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 4 cut(s) 195, 405, 566, 582
Hsp92II CATG 2 cut(s) 152, 592
KpnI GGTACC 1 cut(s) 769
Kzo9I GATC 3 cut(s) 529, 733, 853
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 4 cut(s) 34, 37, 167, 883
LweI GCATC 4 cut(s) 9, 167, 221, 312
MaeI CTAG 3 cut(s) 267, 479, 779
MalI GATC 3 cut(s) 531, 735, 855
MboI GATC 3 cut(s) 529, 733, 853
MboII GAAGA 8 cut(s) 53, 184, 298, 539, 630, 848, 854, 857
MflI RGATCY 1 cut(s) 529
MluCI AATT 2 cut(s) 409, 511
MlyI GAGTC 2 cut(s) 169, 594
MnlI CCTC 9 cut(s) 69, 200, 264, 354, 505, 517, 610, 673, 756
MseI TTAA 3 cut(s) 81, 287, 901
MspI CCGG 1 cut(s) 862
MspR9I CCNGG 1 cut(s) 863
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 863
NdeI CATATG 1 cut(s) 697
NdeII GATC 3 cut(s) 529, 733, 853
NlaIII CATG 2 cut(s) 152, 592
NlaIV GGNNCC 3 cut(s) 88, 537, 767
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 415, 872
PkrI GCNGC 5 cut(s) 24, 27, 157, 553, 898
PleI GAGTC 2 cut(s) 169, 594
PpsI GAGTC 2 cut(s) 169, 594
PscI ACATGT 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 88, 537, 767
PspPI GGNCC 1 cut(s) 536
PsrI GAACNNNNNNTAC 2 cut(s) 749, 781
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 368, 401, 767
RsaNI GTAC 3 cut(s) 367, 400, 766
SaqAI TTAA 3 cut(s) 81, 287, 901
SatI GCNGC 5 cut(s) 23, 26, 156, 552, 897
Sau3AI GATC 3 cut(s) 529, 733, 853
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 2 cut(s) 169, 594
ScrFI CCNGG 1 cut(s) 863
SfaNI GCATC 4 cut(s) 9, 167, 221, 312
SinI GGWCC 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 2 cut(s) 409, 511
SsiI CCGC 2 cut(s) 539, 552
SspMI CTAG 3 cut(s) 267, 479, 779
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 4 cut(s) 41, 184, 352, 775
TaqI TCGA 2 cut(s) 509, 525
TasI AATT 2 cut(s) 409, 511
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 2 cut(s) 415, 872
Tru1I TTAA 3 cut(s) 81, 287, 901
Tru9I TTAA 3 cut(s) 81, 287, 901
TscAI CASTG 1 cut(s) 199
TseI GCWGC 4 cut(s) 22, 25, 155, 896
TspDTI ATGAA 4 cut(s) 486, 492, 577, 726
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 536
XceI RCATGY 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 593
XspI CTAG 3 cut(s) 267, 479, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.