Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

6276438 .. 6277214

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0080200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTATCAGCAGACGACTTGGTGATCGTCTTTCGCCAGCAACCAGGGTTCCGGTTCCATCCCACCGAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAAATCTGCCACAAAAGGTTCAAGCTCAACATCATCACTGAAACCAACGTCTACAAGTGCGAGCCGGAGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCGGCAATGGTTCTTTTTCAGCCCTAGAAATTGTAAGTACCCTAACAAACCTACAAGAATAAACAGGGCGACCAGACATGGCTACTGGAAAGTTACTGGAAAAGATCGCACGATTACGAATAATTCACGGTCGGTTGGAGTAAAGAAAACCCTAGTTTTCTATACAGGCCGTGCGCCTAGTGGGAATCGCACTGACTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGACTGTACCGGATGCTTATGCTCTTTGCAAGGTTTACAAGAAAAGTGGACTGGGTCCAAAAAACGGTGAGCAATATGGGGCGCCGTTTAAGGAGGAAGACTGCTTTGATATGGATGAAGTCCAAGAAGCCCCAGTGAAGCAAATTGAAAATCAGATTAGTAGGGCGAAAGGAGGAGTTAATCCAGTCATTAACAGTTACAGTGATAGTTATGAAATCCCACATCCTTCTTCGTTTGATAGGGACATGGAGGAGTTCATGAAAAAGATTGCTGGTGAGGCTGAGCATGACATATGTATCATGAAGCAGGCATGTTTCTACATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

258

Amino Acids

29.92

Weight (kDa)

8.32

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 141	4.9e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	2 cut(s)	150, 416
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	530
AfaI	GTAC	2 cut(s)	242, 456
AfiI	CCNNNNNNNGG	2 cut(s)	204, 512
AgsI	TTSAA	2 cut(s)	121, 596
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	124, 172, 436
AluI	AGCT	3 cut(s)	124, 172, 436
Alw26I	GTCTC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	379, 532
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	4 cut(s)	34, 415, 527, 734
AvaII	GGWCC	1 cut(s)	503
BaeI	ACNNNNGTAYC	2 cut(s)	727, 760
BanI	GGYRCC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	552
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	2 cut(s)	357, 517
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	3 cut(s)	228, 356, 381
BfoI	RGCGCY	1 cut(s)	533
BlpI	GCTNAGC	1 cut(s)	729
Bme1390I	CCNGG	2 cut(s)	45, 177
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	4 cut(s)	50, 56, 504, 531
BmrFI	CCNGG	2 cut(s)	45, 177
BmrI	ACTGGG	3 cut(s)	409, 509, 575
BmsI	GCATC	2 cut(s)	396, 451
BmuI	ACTGGG	3 cut(s)	409, 509, 575
BpiI	GAAGAC	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	3 cut(s)	51, 197, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 512
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	6 cut(s)	293, 304, 404, 504, 581, 632
Bse3DI	GCAATG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	4 cut(s)	58, 466, 568, 670
BseLI	CCNNNNNNNGG	2 cut(s)	204, 512
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	6 cut(s)	293, 304, 404, 504, 581, 632
BseRI	GAGGAG	4 cut(s)	182, 446, 636, 713
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	529
BsiEI	CGRYCG	1 cut(s)	335
BsiSI	CCGG	6 cut(s)	52, 164, 177, 198, 205, 458
BslFI	GGGAC	2 cut(s)	463, 704
BslI	CCNNNNNNNGG	2 cut(s)	204, 512
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	463, 704
BsnI	GGCC	1 cut(s)	372
Bso31I	GGTCTC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	24, 307
Bsp1720I	GCTNAGC	1 cut(s)	729
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	721
BspHI	TCATGA	2 cut(s)	705, 747
BspLI	GGNNCC	4 cut(s)	50, 56, 504, 531
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	6 cut(s)	293, 304, 404, 504, 581, 632
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	24, 307
BssNAI	GTATAC	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	530
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	5 cut(s)	333, 454, 515, 644, 650
Bst6I	CTCTTC	2 cut(s)	63, 434
BstACI	GRCGYC	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	38, 161, 756
BstDEI	CTNAG	1 cut(s)	729
BstF5I	GGATG	4 cut(s)	58, 466, 568, 670
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	379, 532
BstKTI	GATC	2 cut(s)	27, 310
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	24, 307
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 725
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	762
BstSCI	CCNGG	2 cut(s)	43, 175
BstV2I	GAAGAC	1 cut(s)	552
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	58, 466, 568, 670
BtsIMutI	CAGTG	4 cut(s)	135, 393, 588, 655
Cac8I	GCNNGC	3 cut(s)	38, 161, 756
CciI	TCATGA	2 cut(s)	705, 747
CfoI	GCGC	2 cut(s)	379, 532
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	241, 455
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	8 cut(s)	281, 410, 694, 706, 734, 748, 759, 769
CviJI	RGCY	9 cut(s)	124, 163, 172, 225, 285, 372, 436, 578, 728
CviKI_1	RGCY	9 cut(s)	124, 163, 172, 225, 285, 372, 436, 578, 728
CviQI	GTAC	2 cut(s)	241, 455
DdeI	CTNAG	1 cut(s)	729
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	2 cut(s)	26, 309
DpnII	GATC	2 cut(s)	24, 307
Eam1104I	CTCTTC	2 cut(s)	63, 434
EarI	CTCTTC	2 cut(s)	63, 434
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
FaeI	CATG	8 cut(s)	284, 413, 697, 709, 737, 751, 762, 772
FaqI	GGGAC	2 cut(s)	463, 704
FatI	CATG	8 cut(s)	280, 409, 693, 705, 733, 747, 758, 768
FauNDI	CATATG	1 cut(s)	740
FblI	GTMKAC	2 cut(s)	150, 416
FokI	GGATG	4 cut(s)	45, 473, 575, 657
FspBI	CTAG	3 cut(s)	228, 356, 381
GlaI	GCGC	2 cut(s)	378, 531
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	6 cut(s)	52, 164, 177, 198, 205, 458
HhaI	GCGC	2 cut(s)	379, 532
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	8 cut(s)	284, 413, 697, 709, 737, 751, 762, 772
Hin6I	GCGC	2 cut(s)	377, 530
HinP1I	GCGC	2 cut(s)	377, 530
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	6 cut(s)	52, 164, 177, 198, 205, 458
HphI	GGTGA	4 cut(s)	34, 415, 527, 734
Hpy166II	GTNNAC	4 cut(s)	151, 417, 484, 497
Hpy188I	TCNGA	2 cut(s)	93, 603
Hpy188III	TCNNGA	2 cut(s)	706, 748
Hpy8I	GTNNAC	4 cut(s)	151, 417, 484, 497
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	5 cut(s)	333, 454, 515, 644, 650
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	409, 424, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 725
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	8 cut(s)	284, 413, 697, 709, 737, 751, 762, 772
HspAI	GCGC	2 cut(s)	377, 530
KasI	GGCGCC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	24, 307
LmnI	GCTCC	2 cut(s)	169, 433
LweI	GCATC	2 cut(s)	396, 451
MaeI	CTAG	3 cut(s)	228, 356, 381
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	295, 644
MalI	GATC	2 cut(s)	26, 309
MboI	GATC	2 cut(s)	24, 307
MboII	GAAGA	4 cut(s)	80, 451, 557, 669
MluCI	AATT	3 cut(s)	232, 325, 591
Mly113I	GGCGCC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	8 cut(s)	64, 92, 160, 424, 535, 614, 691, 718
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	3 cut(s)	537, 627, 639
MspI	CCGG	6 cut(s)	52, 164, 177, 198, 205, 458
MspR9I	CCNGG	2 cut(s)	45, 177
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	169, 725
NarI	GGCGCC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	177
NdeI	CATATG	1 cut(s)	740
NdeII	GATC	2 cut(s)	24, 307
NlaIII	CATG	8 cut(s)	284, 413, 697, 709, 737, 751, 762, 772
NlaIV	GGNNCC	4 cut(s)	50, 56, 504, 531
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	762
PagI	TCATGA	2 cut(s)	705, 747
PfeI	GAWTC	1 cut(s)	388
PflFI	GACNNNGTC	1 cut(s)	501
PluTI	GGCGCC	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	4 cut(s)	50, 56, 504, 531
PspPI	GGNCC	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	501
RsaI	GTAC	2 cut(s)	242, 456
RsaNI	GTAC	2 cut(s)	241, 455
SaqAI	TTAA	3 cut(s)	537, 627, 639
Sau3AI	GATC	2 cut(s)	24, 307
Sau96I	GGNCC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	45, 177
SetI	ASST	7 cut(s)	119, 126, 150, 174, 256, 438, 483
SfaNI	GCATC	2 cut(s)	396, 451
SfoI	GGCGCC	1 cut(s)	531
SinI	GGWCC	1 cut(s)	503
Sse9I	AATT	3 cut(s)	232, 325, 591
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	3 cut(s)	228, 356, 381
StyD4I	CCNGG	2 cut(s)	43, 175
TaaI	ACNGT	5 cut(s)	333, 454, 515, 644, 650
TaiI	ACGT	1 cut(s)	150
TasI	AATT	3 cut(s)	232, 325, 591
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	3 cut(s)	537, 627, 639
Tru9I	TTAA	3 cut(s)	537, 627, 639
TscAI	CASTG	4 cut(s)	142, 400, 588, 655
TspDTI	ATGAA	5 cut(s)	579, 675, 694, 722, 764
TspRI	CASTG	4 cut(s)	142, 400, 588, 655
Tth111I	GACNNNGTC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	503
XceI	RCATGY	1 cut(s)	762
XmiI	GTMKAC	2 cut(s)	150, 416
XspI	CTAG	3 cut(s)	228, 356, 381
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.