RchiOBHm_Chr3g0466211

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
12712809 .. 12713411
603 bp
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UTR
Exon/CDS
Intron
PRQ43231

Sequence Viewer

Length: 408 bp
ATGGGTTCAAGCACAGATGTAGCGCTTTCTGGCACATCTCTACCAGCACCAAATGTTCAAGAAATGGTGAGGAATAACCCTTTGCATGTCCCTCAAAGATACTTCAGAAATGTAGTTGACATGCCAAAGGATGGAGATACTAGTCATGGTCGTTCTTCTGAGATGGTAAATCATGAAGTGGCAAGAGAAGTGATGGAAAGGATGAAGGATTCTGCGGCAAAGTTCTTCAAACTTCCCTTGGAAGAGAAGAACAAGATTTCTATGCCATTAGATGAAATGCAAGGCTATGGGCACTCCTCTGTGGTTTCTGAAGACCAAATGCTGGAATGGTCTGACAGACTTACACTTGCCGTTCACCCATCCAAGTACAGAAATCCCAAGGTTTGGCCACCAACACCATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.34

Weight (kDa)

6.51

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 56 - 131 1.3e-16 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 131, 322, 384
AciI CCGC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 386
AcuI CTGAAG 2 cut(s) 88, 330
AfaI GTAC 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 131, 322, 384
AgsI TTSAA 4 cut(s) 9, 59, 229, 403
AhlI ACTAGT 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 79, 347
BaeGI GKGCMC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 4 cut(s) 125, 157, 187, 367
BceAI ACGGC 1 cut(s) 335
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 237, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 322, 384
BseDI CCNNGG 2 cut(s) 237, 378
BseGI GGATG 3 cut(s) 136, 207, 359
BseLI CCNNNNNNNGG 3 cut(s) 131, 322, 384
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 286
BseSI GKGCMC 1 cut(s) 294
BshFI GGCC 1 cut(s) 388
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 3 cut(s) 131, 322, 384
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 294
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 237, 378
BssT1I CCWWGG 2 cut(s) 237, 378
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 136, 207, 359
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 89, 124
BstSLI GKGCMC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 3 cut(s) 136, 207, 359
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 367
CviAII CATG 4 cut(s) 86, 121, 146, 173
CviJI RGCY 2 cut(s) 285, 388
CviKI_1 RGCY 2 cut(s) 285, 388
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 237, 378
Eco47III AGCGCT 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 88, 330
EcoT14I CCWWGG 2 cut(s) 237, 378
ErhI CCWWGG 2 cut(s) 237, 378
FaeI CATG 4 cut(s) 89, 124, 149, 176
FaiI YATR 6 cut(s) 87, 122, 147, 174, 263, 288
FaqI GGGAC 1 cut(s) 74
FatI CATG 4 cut(s) 85, 120, 145, 172
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 3 cut(s) 143, 214, 346
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 1 cut(s) 388
HhaI GCGC 1 cut(s) 25
Hin1II CATG 4 cut(s) 89, 124, 149, 176
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 209
HphI GGTGA 2 cut(s) 79, 347
Hpy166II GTNNAC 2 cut(s) 118, 355
Hpy188I TCNGA 4 cut(s) 107, 160, 310, 334
Hpy188III TCNNGA 2 cut(s) 59, 173
Hpy8I GTNNAC 2 cut(s) 118, 355
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 85, 280
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 4 cut(s) 89, 124, 149, 176
HspAI GCGC 1 cut(s) 23
LpnPI CCDG 3 cut(s) 15, 57, 308
MaeI CTAG 1 cut(s) 141
MboII GAAGA 5 cut(s) 147, 217, 254, 259, 323
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 388
MluNI TGGCCA 1 cut(s) 388
MnlI CCTC 3 cut(s) 63, 102, 307
Mox20I TGGCCA 1 cut(s) 388
MscI TGGCCA 1 cut(s) 388
Msp20I TGGCCA 1 cut(s) 388
NlaIII CATG 4 cut(s) 89, 124, 149, 176
NspI RCATGY 2 cut(s) 89, 124
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 3 cut(s) 131, 322, 384
PkrI GCNGC 1 cut(s) 217
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 294
SetI ASST 1 cut(s) 384
SpeI ACTAGT 1 cut(s) 140
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 141
StyI CCWWGG 2 cut(s) 237, 378
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 189, 218, 288
Van91I CCANNNNNTGG 3 cut(s) 131, 322, 384
XceI RCATGY 2 cut(s) 89, 124
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.