Rw3G011910

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
11766123 .. 11768518
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011910.1

Sequence Viewer

Length: 1023 bp
ATGGGATCAAACTCAGCTCTGTATGACCCATGTCCGCCACTACCAAATGTTCAAGAAATGGTGAAGAGTGACCCTTTTCAGGTGCCTGAAAGATACATCAGGGATGAAAAGGACATTGCAAACGATGCCGGTTTGTGCTCTCAGCTTTCCTCCGAAGTTCCCATCGTCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCGAGGAATGGGGTTTCTTTCAGATGGTAAATCATGGAGTGGCAACAGAAATAACGAAGGGCTTGAAGGATTCAGCGCTGAAGTTCTTCGAACTTCCATTAGAAGAGAAGAACAAAATTGCTATGCCACCAAATGACATACAAGGCTATGGCCATTCCCATGTGGATCAGGTCCTGGATTGGTCTGACAAACTTGTTCTTGTTGTTTACCCACAACAGCATAGAAAGCTCGATGTTTGGCCACCAAATCCATTCAAGGAGGCTATTGAGACATATTCTAGTGAACTTAGACGAATTGGAGAGGAGCTCCTGAGGTCTGTCTCTTTAATAATGGGGATGGAGAAGGATGCACTCCTCCTGTTACATCAAGAGTTGGTACAACCTATGTCTGTGGCGTACTATCCTCCCTGCTTCATGTCTGATAAAGTAATGGGTCTCAAAGAAGATGTACCGGGACTCCAAATCAAACACGAAGAAAAATGGGTACCGATCAAGTCATTGCCCAATGCTTTCGTTGTGAATGTTGGAGATATTATCGAGATTTGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTGGTAACAAACAAAAGCAAGGCGAGGATATCTTATTCAACCTTTTATATACCACATAGAAATGTTGATATTGAACCCCTTAATCAAATGGTACTTGAGTCTCCAGGGTCCCTTCCATTGTACAAGAAAGTCACTTACGGAGATTATCTGAAGCAAACCCAGAAGATGAAAAAAGAAGGAAAGGCACATGTCACTGAAGTTGCCAAGATTGCCAATTAA

Protein Analysis

340

Amino Acids

38.68

Weight (kDa)

5.74

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 157 2.2e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 221 - 285 1.5e-18 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 709
AccB1I GGYRCC 2 cut(s) 82, 709
AciI CCGC 1 cut(s) 35
AclWI GGATC 2 cut(s) 13, 399
AcoI YGGCCR 2 cut(s) 376, 464
AcuI CTGAAG 3 cut(s) 326, 974, 1020
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 7 cut(s) 603, 623, 675, 711, 785, 897, 926
AfeI AGCGCT 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 6 cut(s) 53, 292, 481, 797, 843, 878
AjnI CCWGG 3 cut(s) 219, 399, 907
AluBI AGCT 6 cut(s) 17, 145, 205, 214, 454, 532
AluI AGCT 6 cut(s) 17, 145, 205, 214, 454, 532
Alw21I GWGCWC 2 cut(s) 140, 534
Alw26I GTCTC 4 cut(s) 488, 550, 665, 909
AlwI GGATC 2 cut(s) 13, 399
AlwNI CAGNNNCTG 1 cut(s) 400
Aor51HI AGCGCT 1 cut(s) 303
AoxI GGCC 2 cut(s) 376, 464
Asp700I GAANNNNTTC 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 709
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 217, 397, 912
AsuC2I CCSGG 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 315
AvaII GGWCC 3 cut(s) 217, 397, 912
AxyI CCTNAGG 1 cut(s) 536
BaeI ACNNNNGTAYC 2 cut(s) 887, 920
BalI TGGCCA 2 cut(s) 378, 466
BanI GGYRCC 2 cut(s) 82, 709
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 140, 534
BccI CCATC 3 cut(s) 170, 244, 556
BciT130I CCWGG 3 cut(s) 221, 401, 909
BcnI CCSGG 1 cut(s) 678
BcoDI GTCTC 4 cut(s) 488, 550, 665, 909
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 221, 401, 678, 909
Bme18I GGWCC 3 cut(s) 217, 397, 912
BmgT120I GGNCC 3 cut(s) 217, 397, 912
BmiI GGNNCC 4 cut(s) 84, 711, 913, 914
BmrFI CCNGG 4 cut(s) 221, 401, 678, 909
BmsI GCATC 2 cut(s) 115, 562
BoxI GACNNNNGTC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 516, 548
BpmI CTGGAG 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 920
BpuMI CCSGG 1 cut(s) 678
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 908
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 128
Bse21I CCTNAGG 1 cut(s) 536
Bse3DI GCAATG 2 cut(s) 114, 722
BseBI CCWGG 3 cut(s) 221, 401, 909
BseDI CCNNGG 1 cut(s) 908
BseGI GGATG 3 cut(s) 109, 567, 577
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 114, 722
BseMII CTCAG 3 cut(s) 27, 155, 527
BseRI GAGGAG 3 cut(s) 215, 542, 569
BshFI GGCC 2 cut(s) 378, 466
BshNI GGYRCC 2 cut(s) 82, 709
BsiHKAI GWGCWC 2 cut(s) 140, 534
BsiSI CCGG 2 cut(s) 129, 677
BslFI GGGAC 2 cut(s) 693, 898
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 4 cut(s) 488, 550, 665, 909
BsmFI GGGAC 2 cut(s) 693, 898
BsnI GGCC 2 cut(s) 378, 466
Bso31I GGTCTC 1 cut(s) 665
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 140, 534
Bsp1407I TGTACA 1 cut(s) 924
Bsp143I GATC 3 cut(s) 5, 391, 714
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 378, 466
BspCNI CTCAG 3 cut(s) 26, 154, 528
BspLI GGNNCC 4 cut(s) 84, 711, 913, 914
BspPI GGATC 2 cut(s) 13, 399
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 2 cut(s) 82, 709
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 114, 722
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 924
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 908
BssMI GATC 3 cut(s) 5, 391, 714
Bst2UI CCWGG 3 cut(s) 221, 401, 909
Bst6I CTCTTC 2 cut(s) 59, 324
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 924
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 4 cut(s) 13, 141, 512, 536
BstF5I GGATG 3 cut(s) 109, 567, 577
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 8, 394, 717
BstMAI GTCTC 4 cut(s) 488, 550, 665, 909
BstMBI GATC 3 cut(s) 5, 391, 714
BstMWI GCNNNNNNNGC 4 cut(s) 125, 211, 451, 1013
BstNI CCWGG 3 cut(s) 221, 401, 909
BstNSI RCATGY 1 cut(s) 995
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 4 cut(s) 219, 399, 676, 907
Bsu36I CCTNAGG 1 cut(s) 536
BsuRI GGCC 2 cut(s) 378, 466
BtsCI GGATG 3 cut(s) 109, 567, 577
BtsIMutI CAGTG 1 cut(s) 996
Cac8I GCNNGC 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 217, 397, 912
Csp6I GTAC 7 cut(s) 602, 622, 674, 710, 784, 896, 925
CviAII CATG 5 cut(s) 30, 260, 386, 640, 992
CviQI GTAC 7 cut(s) 602, 622, 674, 710, 784, 896, 925
DdeI CTNAG 4 cut(s) 13, 141, 512, 536
DpnI GATC 3 cut(s) 7, 393, 716
DpnII GATC 3 cut(s) 5, 391, 714
DraIII CACNNNGTG 1 cut(s) 805
EaeI YGGCCR 2 cut(s) 376, 464
Eam1104I CTCTTC 2 cut(s) 59, 324
EarI CTCTTC 2 cut(s) 59, 324
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 665
Eco32I GATATC 1 cut(s) 834
Eco47I GGWCC 3 cut(s) 217, 397, 912
Eco47III AGCGCT 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 3 cut(s) 326, 974, 1020
Eco81I CCTNAGG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 2 cut(s) 397, 912
EcoRII CCWGG 3 cut(s) 219, 399, 907
EcoRV GATATC 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 5 cut(s) 33, 263, 389, 643, 995
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 2 cut(s) 693, 898
FatI CATG 5 cut(s) 29, 259, 385, 639, 991
FokI GGATG 3 cut(s) 116, 574, 584
FriOI GRGCYC 1 cut(s) 534
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 891
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 378, 466
HapII CCGG 2 cut(s) 129, 677
HhaI GCGC 1 cut(s) 304
Hin1II CATG 5 cut(s) 33, 263, 389, 643, 995
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 3 cut(s) 296, 681, 902
HpaII CCGG 2 cut(s) 129, 677
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 433, 509
Hpy188I TCNGA 5 cut(s) 154, 249, 412, 646, 954
Hpy188III TCNNGA 4 cut(s) 53, 535, 593, 763
Hpy8I GTNNAC 2 cut(s) 433, 509
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 5 cut(s) 277, 286, 562, 926, 974
HpyCH4V TGCA 2 cut(s) 119, 575
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 211, 451, 1013
HpyF3I CTNAG 4 cut(s) 13, 141, 512, 536
Hsp92II CATG 5 cut(s) 33, 263, 389, 643, 995
HspAI GCGC 1 cut(s) 302
KflI GGGWCCC 1 cut(s) 912
KpnI GGTACC 1 cut(s) 713
Kzo9I GATC 3 cut(s) 5, 391, 714
LmnI GCTCC 3 cut(s) 202, 529, 537
LweI GCATC 2 cut(s) 115, 562
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 5 cut(s) 68, 585, 808, 934, 994
MalI GATC 3 cut(s) 7, 393, 716
MboI GATC 3 cut(s) 5, 391, 714
MboII GAAGA 7 cut(s) 76, 304, 341, 346, 680, 710, 979
MhlI GDGCHC 2 cut(s) 140, 534
MlsI TGGCCA 2 cut(s) 378, 466
MluCI AATT 3 cut(s) 342, 519, 1018
MluNI TGGCCA 2 cut(s) 378, 466
MlyI GAGTC 2 cut(s) 675, 911
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 9 cut(s) 160, 193, 223, 478, 520, 531, 590, 639, 822
Mox20I TGGCCA 2 cut(s) 378, 466
MroXI GAANNNNTTC 1 cut(s) 311
MscI TGGCCA 2 cut(s) 378, 466
MseI TTAA 3 cut(s) 551, 885, 1021
MslI CAYNNNNRTG 2 cut(s) 384, 864
Msp20I TGGCCA 2 cut(s) 378, 466
MspI CCGG 2 cut(s) 129, 677
MspR9I CCNGG 4 cut(s) 221, 401, 678, 909
MvaI CCWGG 3 cut(s) 221, 401, 909
MwoI GCNNNNNNNGC 4 cut(s) 125, 211, 451, 1013
NciI CCSGG 1 cut(s) 678
NdeII GATC 3 cut(s) 5, 391, 714
NlaIII CATG 5 cut(s) 33, 263, 389, 643, 995
NlaIV GGNNCC 4 cut(s) 84, 711, 913, 914
NmuCI GTSAC 3 cut(s) 68, 934, 994
NspI RCATGY 1 cut(s) 995
NspV TTCGAA 1 cut(s) 315
PciI ACATGT 1 cut(s) 991
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 399
PleI GAGTC 2 cut(s) 675, 910
PpsI GAGTC 2 cut(s) 675, 910
PpuMI RGGWCCY 2 cut(s) 397, 912
PscI ACATGT 1 cut(s) 991
PshAI GACNNNNGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 534
Psp5II RGGWCCY 2 cut(s) 397, 912
Psp6I CCWGG 3 cut(s) 219, 399, 907
PspGI CCWGG 3 cut(s) 219, 399, 907
PspN4I GGNNCC 4 cut(s) 84, 711, 913, 914
PspPI GGNCC 3 cut(s) 217, 397, 912
PspPPI RGGWCCY 2 cut(s) 397, 912
PstNI CAGNNNCTG 1 cut(s) 400
RsaI GTAC 7 cut(s) 603, 623, 675, 711, 785, 897, 926
RsaNI GTAC 7 cut(s) 602, 622, 674, 710, 784, 896, 925
RseI CAYNNNNRTG 2 cut(s) 384, 864
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 3 cut(s) 551, 885, 1021
Sau3AI GATC 3 cut(s) 5, 391, 714
Sau96I GGNCC 3 cut(s) 217, 397, 912
SchI GAGTC 2 cut(s) 675, 911
ScrFI CCNGG 4 cut(s) 221, 401, 678, 909
SduI GDGCHC 2 cut(s) 140, 534
SfaNI GCATC 2 cut(s) 115, 562
SfuI TTCGAA 1 cut(s) 315
SinI GGWCC 3 cut(s) 217, 397, 912
SmiMI CAYNNNNRTG 2 cut(s) 384, 864
SmlI CTYRAG 1 cut(s) 899
SmoI CTYRAG 1 cut(s) 899
Sse9I AATT 3 cut(s) 342, 519, 1018
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 4 cut(s) 219, 399, 676, 907
TaqI TCGA 4 cut(s) 168, 315, 456, 762
TasI AATT 3 cut(s) 342, 519, 1018
TatI WGTACW 2 cut(s) 783, 924
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 3 cut(s) 551, 885, 1021
Tru9I TTAA 3 cut(s) 551, 885, 1021
TscAI CASTG 1 cut(s) 1003
TseFI GTSAC 3 cut(s) 68, 934, 994
Tsp45I GTSAC 3 cut(s) 68, 934, 994
TspDTI ATGAA 3 cut(s) 120, 628, 986
TspGWI ACGGA 1 cut(s) 957
TspRI CASTG 1 cut(s) 1003
VpaK11BI GGWCC 3 cut(s) 217, 397, 912
XceI RCATGY 1 cut(s) 995
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.