FvH4_6g13281

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000451
Physical Location & Seq
Forward (+)
8085923 .. 8086516
594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13281.t1

Sequence Viewer

Length: 501 bp
ATGGAGAAGGATGCTCTTCTTGGAATGCATCAAGAATTGGACCAGGTCTTGCGCGTGAACTACTATCCTCCATGCCACATGCCTGATAAAGTAATGGGTGCAAGTCCACACTCGGACACAAACACCATAACCATACTTATGCAAGAAGACGATGTCACCGGATTACATATCAGAAAACAAGGTCAATGGGTTCCAGTGAAGCCAATTCCAAATGCTCTCGTTGTAAATGTCGGTGATTTGATTGAGATATGGAGCAACGGGAAGTACAAGAGCATTGAGCATAGAGGCGTCACAAACGAAAGTAAAGTGAGGATATCATATGCATCATTTCTTTGCCCACAAGGTGATGTGGAAGTTGCACCATTTGATCATCTGCTGGAGCCACCTGGGTCCCTGCAAGCTTACAAGAAAATCAAATACGGAGATTATACGATGAATGCTTTGAAGGGAAAACTTAGGGGGAAGTCGTACATTCATATGGCCAAGATTGCTAGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

167

Amino Acids

18.59

Weight (kDa)

7.79

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 14 - 113 4e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 2 cut(s) 266, 470
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 2 cut(s) 42, 385
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
AoxI GGCC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 40, 390
AsuHPI GGTGA 3 cut(s) 148, 245, 356
AvaII GGWCC 2 cut(s) 40, 390
BalI TGGCCA 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 44, 387
BclI TGATCA 1 cut(s) 367
BfaI CTAG 1 cut(s) 492
Bme1390I CCNGG 2 cut(s) 44, 387
Bme18I GGWCC 2 cut(s) 40, 390
BmgT120I GGNCC 2 cut(s) 40, 390
BmiI GGNNCC 4 cut(s) 192, 381, 391, 392
BmrFI CCNGG 2 cut(s) 44, 387
BmsI GCATC 2 cut(s) 37, 332
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 386
BsaWI WCCGGW 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 2 cut(s) 44, 387
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 482
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 2 cut(s) 30, 442
BsnI GGCC 1 cut(s) 482
Bsp143I GATC 1 cut(s) 367
BspANI GGCC 1 cut(s) 482
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 4 cut(s) 192, 381, 391, 392
BspQI GCTCTTC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 44, 387
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 44, 387
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 42, 385
BstUI CGCG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 40, 390
CseI GACGC 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 42
Csp6I GTAC 2 cut(s) 265, 469
CviAII CATG 2 cut(s) 72, 79
CviJI RGCY 4 cut(s) 202, 382, 401, 482
CviKI_1 RGCY 4 cut(s) 202, 382, 401, 482
CviQI GTAC 2 cut(s) 265, 469
DdeI CTNAG 1 cut(s) 455
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 40, 390
EcoO109I RGGNCCY 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 42, 385
EcoRV GATATC 1 cut(s) 315
EcoT22I ATGCAT 2 cut(s) 30, 325
FaeI CATG 2 cut(s) 75, 82
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 71, 78
FauNDI CATATG 2 cut(s) 319, 477
FbaI TGATCA 1 cut(s) 367
FokI GGATG 1 cut(s) 23
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 75, 82
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 399
HpaII CCGG 1 cut(s) 159
HphI GGTGA 3 cut(s) 148, 245, 356
Hpy166II GTNNAC 2 cut(s) 58, 107
Hpy188I TCNGA 2 cut(s) 115, 173
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 2 cut(s) 58, 107
HpyAV CCTTC 1 cut(s) 439
HpyCH4V TGCA 6 cut(s) 28, 101, 142, 323, 359, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 1 cut(s) 455
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 75, 82
HspAI GCGC 1 cut(s) 52
KflI GGGWCCC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 252, 379
LpnPI CCDG 9 cut(s) 29, 56, 96, 172, 207, 362, 372, 399, 407
LweI GCATC 2 cut(s) 37, 332
MabI ACCWGGT 1 cut(s) 42
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 154, 289
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 2 cut(s) 8, 158
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 2 cut(s) 35, 204
MluNI TGGCCA 1 cut(s) 482
MnlI CCTC 3 cut(s) 78, 278, 303
Mox20I TGGCCA 1 cut(s) 482
Mph1103I ATGCAT 2 cut(s) 30, 325
MscI TGGCCA 1 cut(s) 482
MslI CAYNNNNRTG 2 cut(s) 137, 476
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 44, 387
Mva1269I GAATGC 2 cut(s) 30, 442
MvaI CCWGG 2 cut(s) 44, 387
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeI CATATG 2 cut(s) 319, 477
NdeII GATC 1 cut(s) 367
NlaIII CATG 2 cut(s) 75, 82
NlaIV GGNNCC 4 cut(s) 192, 381, 391, 392
NmuCI GTSAC 2 cut(s) 154, 289
NsiI ATGCAT 2 cut(s) 30, 325
NspI RCATGY 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 21
PctI GAATGC 2 cut(s) 30, 442
PflFI GACNNNGTC 2 cut(s) 44, 152
PpuMI RGGWCCY 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 42, 385
PspGI CCWGG 2 cut(s) 42, 385
PspN4I GGNNCC 4 cut(s) 192, 381, 391, 392
PspPI GGNCC 2 cut(s) 40, 390
PspPPI RGGWCCY 1 cut(s) 390
PsyI GACNNNGTC 2 cut(s) 44, 152
RsaI GTAC 2 cut(s) 266, 470
RsaNI GTAC 2 cut(s) 265, 469
RseI CAYNNNNRTG 2 cut(s) 137, 476
SapI GCTCTTC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 2 cut(s) 40, 390
ScrFI CCNGG 2 cut(s) 44, 387
SetI ASST 5 cut(s) 48, 184, 346, 388, 403
SexAI ACCWGGT 1 cut(s) 42
SfaNI GCATC 2 cut(s) 37, 332
SinI GGWCC 2 cut(s) 40, 390
SmiMI CAYNNNNRTG 2 cut(s) 137, 476
Sse9I AATT 2 cut(s) 35, 204
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 42, 385
TasI AATT 2 cut(s) 35, 204
TatI WGTACW 1 cut(s) 264
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 2 cut(s) 154, 289
Tsp45I GTSAC 2 cut(s) 154, 289
TspDTI ATGAA 2 cut(s) 449, 464
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 1 cut(s) 201
Tth111I GACNNNGTC 2 cut(s) 44, 152
VpaK11BI GGWCC 2 cut(s) 40, 390
XceI RCATGY 1 cut(s) 82
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 2 cut(s) 30, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.