RLG00000024601

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
37413855 .. 37415865
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024601

Sequence Viewer

Length: 1122 bp
ATGAGTTCAAACACAGATGTGGCGTTTGTGCAAGAGGATAAGGATGCTCGGAGTTTTTCCCAGAAACCACATAGATCACCTCTTCCGGTACCAAATGTTCAAGAACTGGTAAGGAATGATCCTTTACAGGTCCCCAAAAGATATATTAGGAAAGAAGAAGACATGCCGAAGGAAGCGGATCTTTGTCATCATCTTTCTTCTGAACTTCCTATCATTGATGTTTCTTTGCTCTCCAAAGGGGACAACGAGGAGCTTCGCAAACTCGACCTGGCTTGCAAAGAATGGGGATTCTTTGTGATGATAAATCATGGAGTGGAAACAGAAGTAATGCAGGGCATGAAGGATGCTGCGGACAAGTTCTTTGAACTTCCAATAGAAGAGAAGAATTTTATTGCTGTGCCATCAGCTCAGAGACAAGGCTATGGTTTTAACCAAGCAATTCTTGAGGAGCAGATTTTGGATTGGTCTGACAGAATTCTTCTCGGGCTTTACCCTGATCGATATAGAAAGCCTGAGGTTTGGCCACCGACACCATTCAAGGAGGCTATTGAGATATATGGTGGTGAAGTTAGACATGTTGCAGAGGAGCTCCTGAGATCTCTATCTTTGATTATGGGGATGGAGAAGGATGTTCTTCTTGAACTACATCAAGAGCTGGCTCAATATCTGTCTGTGGCCTATTATCCTTCATGCTCTATGCCTGATAAAGTACTAGGTCTAACCCCTCACTCCGACAAGGGTAGCATAACCATACTTATGCAAGACGCCAGTTTTACCGGACTACAAGTTAAACATGAAGGAAAATGGGTACCGGTGAAGCCAATTCCAAACTCTTTCGTTGTGAATGTTGGAGATGCGATTGAGATATGGAGTAATGGGAGGTACAAGAGCATTGAGCACAGAGTTGTGACAAATGAAAGCAAAGCAAGGTTATCTTATGCATCATTTTTTGTGCCACATGAAGATGCAGAAATTGAACCCTTTGATCAAATGGTACTCAACTCTCCAGAGTCCATTCAGATATACAAGAAAGTCAGATATGGAGAATATACGAAGGAAATTTTCTCGAAGAAGAAATTTTATGAGAAAGAACAACTTGAATTTGCCAAGATTGGAAGTTAG

Protein Analysis

374

Amino Acids

42.84

Weight (kDa)

5.31

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 69 - 176 1.3e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 223 - 318 7.2e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 88, 808
AccB1I GGYRCC 2 cut(s) 88, 808
AciI CCGC 2 cut(s) 176, 350
AclWI GGATC 2 cut(s) 113, 186
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 5 cut(s) 385, 474, 1059, 1076, 1100
AcyI GRCGYC 1 cut(s) 765
AfaI GTAC 5 cut(s) 90, 711, 810, 884, 996
AflIII ACRYGT 1 cut(s) 574
AgeI ACCGGT 1 cut(s) 811
AgsI TTSAA 7 cut(s) 9, 101, 365, 538, 641, 977, 1100
AjnI CCWGG 1 cut(s) 267
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 4 cut(s) 253, 407, 589, 655
AluI AGCT 4 cut(s) 253, 407, 589, 655
Alw21I GWGCWC 2 cut(s) 591, 900
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 2 cut(s) 113, 186
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 2 cut(s) 521, 675
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 5 cut(s) 385, 474, 1059, 1076, 1100
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AsiGI ACCGGT 1 cut(s) 811
Asp718I GGTACC 2 cut(s) 88, 808
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 69, 575, 826
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 513
BalI TGGCCA 1 cut(s) 523
BanI GGYRCC 2 cut(s) 88, 808
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 591, 900
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 409, 613
BciT130I CCWGG 1 cut(s) 269
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 1 cut(s) 713
BglII AGATCT 1 cut(s) 596
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BmcAI AGTACT 1 cut(s) 711
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 3 cut(s) 90, 132, 810
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 5 cut(s) 34, 334, 844, 950, 955
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 464
Bsa29I ATCGAT 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 765
BsaWI WCCGGW 3 cut(s) 85, 776, 811
Bse118I RCCGGY 1 cut(s) 811
Bse1I ACTGG 2 cut(s) 111, 768
Bse21I CCTNAGG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 601
BseBI CCWGG 1 cut(s) 269
BseCI ATCGAT 1 cut(s) 499
BseGI GGATG 4 cut(s) 49, 349, 624, 634
BseJI GATNNNNATC 1 cut(s) 601
BseMII CTCAG 3 cut(s) 422, 504, 584
BseNI ACTGG 2 cut(s) 111, 768
BseRI GAGGAG 3 cut(s) 263, 461, 599
BseXI GCAGC 1 cut(s) 334
BshFI GGCC 2 cut(s) 523, 677
BshNI GGYRCC 2 cut(s) 88, 808
BshTI ACCGGT 1 cut(s) 811
BshVI ATCGAT 1 cut(s) 499
BsiHKAI GWGCWC 2 cut(s) 591, 900
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 3 cut(s) 86, 777, 812
BslFI GGGAC 2 cut(s) 116, 254
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 2 cut(s) 116, 254
BsnI GGCC 2 cut(s) 523, 677
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 591, 900
Bsp143I GATC 6 cut(s) 74, 118, 178, 496, 596, 985
BspACI CCGC 2 cut(s) 176, 350
BspANI GGCC 2 cut(s) 523, 677
BspCNI CTCAG 3 cut(s) 421, 505, 585
BspDI ATCGAT 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 90, 132, 810
BspPI GGATC 2 cut(s) 113, 186
BspT107I GGYRCC 2 cut(s) 88, 808
BsrFI RCCGGY 1 cut(s) 811
BsrI ACTGG 2 cut(s) 111, 768
BssAI RCCGGY 1 cut(s) 811
BssMI GATC 6 cut(s) 74, 118, 178, 496, 596, 985
BssNI GRCGYC 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 269
Bst6I CTCTTC 2 cut(s) 87, 372
BstACI GRCGYC 1 cut(s) 765
BstC8I GCNNGC 2 cut(s) 274, 657
BstDEI CTNAG 3 cut(s) 408, 513, 593
BstF5I GGATG 4 cut(s) 49, 349, 624, 634
BstKTI GATC 6 cut(s) 77, 121, 181, 499, 599, 988
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 6 cut(s) 74, 118, 178, 496, 596, 985
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 2 cut(s) 166, 578
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 334
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 178, 596
BstYI RGATCY 2 cut(s) 178, 596
Bsu15I ATCGAT 1 cut(s) 499
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 2 cut(s) 523, 677
BsuTUI ATCGAT 1 cut(s) 499
BtsCI GGATG 4 cut(s) 49, 349, 624, 634
Cac8I GCNNGC 2 cut(s) 274, 657
Cfr10I RCCGGY 1 cut(s) 811
Cfr13I GGNCC 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 499
CseI GACGC 1 cut(s) 773
Csp6I GTAC 5 cut(s) 89, 710, 809, 883, 995
CspAI ACCGGT 1 cut(s) 811
CviAII CATG 7 cut(s) 163, 308, 337, 575, 690, 794, 959
CviQI GTAC 5 cut(s) 89, 710, 809, 883, 995
DdeI CTNAG 3 cut(s) 408, 513, 593
DpnI GATC 6 cut(s) 76, 120, 180, 498, 598, 987
DpnII GATC 6 cut(s) 74, 118, 178, 496, 596, 985
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 87, 372
EarI CTCTTC 2 cut(s) 87, 372
Ecl136II GAGCTC 1 cut(s) 589
Eco24I GRGCYC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 589
Eco81I CCTNAGG 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 943
EcoT38I GRGCYC 1 cut(s) 591
FaeI CATG 7 cut(s) 166, 311, 340, 578, 693, 797, 962
FalI AAGNNNNNCTT 8 cut(s) 165, 197, 426, 458, 919, 951, 1080, 1112
FaqI GGGAC 2 cut(s) 116, 254
FatI CATG 7 cut(s) 162, 307, 336, 574, 689, 793, 958
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 4 cut(s) 56, 356, 631, 641
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 713
GluI GCNGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 990
HaeIII GGCC 2 cut(s) 523, 677
HapII CCGG 3 cut(s) 86, 777, 812
HgaI GACGC 1 cut(s) 773
Hin1I GRCGYC 1 cut(s) 765
Hin1II CATG 7 cut(s) 166, 311, 340, 578, 693, 797, 962
HinfI GANTC 2 cut(s) 288, 1010
HpaII CCGG 3 cut(s) 86, 777, 812
HphI GGTGA 3 cut(s) 69, 575, 826
Hpy188I TCNGA 7 cut(s) 51, 202, 411, 469, 733, 1020, 1037
Hpy188III TCNNGA 7 cut(s) 101, 443, 592, 638, 650, 1007, 1066
HpyAV CCTTC 6 cut(s) 163, 334, 619, 696, 791, 1048
HpyCH4V TGCA 7 cut(s) 31, 276, 331, 581, 760, 941, 968
HpyF3I CTNAG 3 cut(s) 408, 513, 593
Hsp92I GRCGYC 1 cut(s) 765
Hsp92II CATG 7 cut(s) 166, 311, 340, 578, 693, 797, 962
KpnI GGTACC 2 cut(s) 92, 812
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 6 cut(s) 74, 118, 178, 496, 596, 985
LmnI GCTCC 4 cut(s) 250, 448, 586, 594
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 5 cut(s) 34, 334, 844, 950, 955
MaeI CTAG 1 cut(s) 713
MaeIII GTNAC 1 cut(s) 907
MalI GATC 6 cut(s) 76, 120, 180, 498, 598, 987
MboI GATC 6 cut(s) 74, 118, 178, 496, 596, 985
MflI RGATCY 2 cut(s) 178, 596
MhlI GDGCHC 2 cut(s) 591, 900
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 8 cut(s) 385, 438, 474, 822, 972, 1059, 1076, 1100
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 1 cut(s) 1019
MmeI TCCRAC 2 cut(s) 756, 829
MnlI CCTC 9 cut(s) 28, 90, 241, 439, 508, 535, 577, 735, 873
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 943
MscI TGGCCA 1 cut(s) 523
MseI TTAA 2 cut(s) 429, 789
MslI CAYNNNNRTG 3 cut(s) 17, 755, 963
Msp20I TGGCCA 1 cut(s) 523
MspI CCGG 3 cut(s) 86, 777, 812
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
NdeII GATC 6 cut(s) 74, 118, 178, 496, 596, 985
NlaIII CATG 7 cut(s) 166, 311, 340, 578, 693, 797, 962
NlaIV GGNNCC 3 cut(s) 90, 132, 810
NmuCI GTSAC 1 cut(s) 907
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 2 cut(s) 166, 578
OliI CACNNNNGTG 1 cut(s) 17
PciI ACATGT 1 cut(s) 574
PfeI GAWTC 1 cut(s) 288
PinAI ACCGGT 1 cut(s) 811
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
PpuMI RGGWCCY 1 cut(s) 130
PscI ACATGT 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 90, 132, 810
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PsuI RGATCY 2 cut(s) 178, 596
RsaI GTAC 5 cut(s) 90, 711, 810, 884, 996
RsaNI GTAC 5 cut(s) 89, 710, 809, 883, 995
RseI CAYNNNNRTG 3 cut(s) 17, 755, 963
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 2 cut(s) 429, 789
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 6 cut(s) 74, 118, 178, 496, 596, 985
Sau96I GGNCC 1 cut(s) 130
ScaI AGTACT 1 cut(s) 711
SchI GAGTC 1 cut(s) 1019
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 591, 900
SfaNI GCATC 5 cut(s) 34, 334, 844, 950, 955
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 3 cut(s) 17, 755, 963
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 8 cut(s) 385, 438, 474, 822, 972, 1059, 1076, 1100
SsiI CCGC 2 cut(s) 176, 350
SspMI CTAG 1 cut(s) 713
SstI GAGCTC 1 cut(s) 591
StyD4I CCNGG 1 cut(s) 267
TaqI TCGA 3 cut(s) 264, 499, 1067
TasI AATT 8 cut(s) 385, 438, 474, 822, 972, 1059, 1076, 1100
TatI WGTACW 1 cut(s) 709
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 2 cut(s) 429, 789
Tru9I TTAA 2 cut(s) 429, 789
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 5 cut(s) 353, 678, 810, 930, 975
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 5 cut(s) 385, 474, 1059, 1076, 1100
XceI RCATGY 2 cut(s) 166, 578
XspI CTAG 1 cut(s) 713
ZrmI AGTACT 1 cut(s) 711
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.