pycom04g12010

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000451
Physical Location & Seq
Reverse (-)
14973504 .. 14974208
705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12010.3

Sequence Viewer

Length: 492 bp
ATGTTGGATACTTTTGACGCATATTCAAGTGAAGTTAAAAGAGTTGGGGAGGAGCTCCTAGAGTCCTTTTCTATAAATATGGGGATGGGGAAGGACACTCTTCTTGGTCTACACAAAGAGTTGCACCAAACCCTGCGTTTGAACTACATTCCTCCTTGCTGCATGCCTGATAAAGTCCTATGTCTAAGACCACACTCGGACCCAGGCACCATAAGCATGCTCAACGTAAACGGATTACAGATTCGAAAAATGATATGGAGTAATGGGAAGTACAAGAGCATTGAACATAGAGTCATCGCATACGAAAGGAAGGCGAGAATATCTTATGCATCGTTTATTTGTCCACATTTTGATGTGGAAATTGAACCGTTGGATCAAATGGTAGACACATCAAGAATGTACAAGAAAGTCAAATATGGTGATTATCTGATGACTTCCTTGAGTGGGGATTATAAGGGGAGGGGAGTCCCCTCAGGGGACACACTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

164

Amino Acids

18.62

Weight (kDa)

8.29

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 206
AccI GTMKAC 2 cut(s) 109, 384
AclWI GGATC 1 cut(s) 381
AfaI GTAC 2 cut(s) 272, 401
AfiI CCNNNNNNNGG 2 cut(s) 444, 475
AgsI TTSAA 4 cut(s) 27, 142, 284, 365
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 431
AsuII TTCGAA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 472
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 201, 208
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 444, 475
Bse21I CCTNAGG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 444, 475
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 57
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 444, 475
BsmFI GGGAC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 485
BspLI GGNNCC 2 cut(s) 201, 208
BspPI GGATC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 244
BstC8I GCNNGC 2 cut(s) 164, 218
BstDEI CTNAG 2 cut(s) 185, 472
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 2 cut(s) 166, 220
BstSCI CCNGG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 472
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 2 cut(s) 164, 218
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 271, 400
CviAII CATG 2 cut(s) 163, 217
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
CviQI GTAC 2 cut(s) 271, 400
DdeI CTNAG 2 cut(s) 185, 472
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 2 cut(s) 166, 220
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 162, 216
FblI GTMKAC 2 cut(s) 109, 384
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 160
HgaI GACGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 166, 220
HinfI GANTC 4 cut(s) 62, 241, 291, 465
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 4 cut(s) 110, 229, 344, 385
Hpy188I TCNGA 2 cut(s) 199, 429
Hpy188III TCNNGA 1 cut(s) 393
Hpy8I GTNNAC 4 cut(s) 110, 229, 344, 385
HpyAV CCTTC 2 cut(s) 85, 304
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 124, 162, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 185, 472
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 166, 220
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 52, 60
LpnPI CCDG 5 cut(s) 146, 180, 189, 216, 459
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 59
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 360
MlyI GAGTC 3 cut(s) 71, 300, 474
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 4 cut(s) 43, 162, 453, 481
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 2 cut(s) 215, 351
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 1 cut(s) 373
NlaIII CATG 2 cut(s) 166, 220
NlaIV GGNNCC 2 cut(s) 201, 208
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 2 cut(s) 166, 220
NspV TTCGAA 1 cut(s) 244
PaeI GCATGC 2 cut(s) 166, 220
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 3 cut(s) 70, 299, 473
PpsI GAGTC 3 cut(s) 70, 299, 473
PsiI TTATAA 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 201, 208
PspPI GGNCC 1 cut(s) 199
RsaI GTAC 2 cut(s) 272, 401
RsaNI GTAC 2 cut(s) 271, 400
RseI CAYNNNNRTG 2 cut(s) 215, 351
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 3 cut(s) 71, 300, 474
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 57
SetI ASST 2 cut(s) 57, 228
SfaNI GCATC 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 244
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 215, 351
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SphI GCATGC 2 cut(s) 166, 220
Sse9I AATT 1 cut(s) 360
SspMI CTAG 1 cut(s) 59
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 244
TasI AATT 1 cut(s) 360
TatI WGTACW 2 cut(s) 270, 399
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 489
TseI GCWGC 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 2 cut(s) 166, 220
XmiI GTMKAC 2 cut(s) 109, 384
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.