Rmu_sc0007597.1_g000012

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007597.1
Physical Location & Seq
Forward (+)
35951 .. 38000
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007597.1_g000012.1.cds

Sequence Viewer

Length: 1092 bp
atgagtagtcttgatatggcatctctgccagtggaaccaaatgttcaagaactggttaggagtaatgcattaatgatccccgagaagtaccttttaaagaatatagatcaacaagacaagccaaagagtatagcaaacactagtcatgatttttcttctgatgatatccccatcatccatttttctttgctctcaagtgggcacgaggaggagcttaacaaactggatctggcttgcaaggaatggggattcttccagctcgttaatcatggagtggcaagagaagtgttgcagggcatgaaggatggttctgcaaagttctttgaacttcctttagaagagaagaataaaatttccatgtcaacagcaaaaggcacacgagaaggctatggacaagcctttgtggttactgaagagcagaccctcgactggtccgacgcactggttctcaatctttacccatcccagataaggaaccttgagtattggccaaccacaccaaggggattcaaggaggctattgaggcatatgctagtgaagttaaaagagttggagaggagatccttagatctctgtctttaactatggggatggagaaggatgttcttcttggactgcatcaagatttggcagcagcattgcgcataaactacattcctccatgctctatgcctgataaagtactaggtctaagtgcacatgcggatgcaggcaccattactgtacttatgcaagaagataatgttatcggattacagattcgaaaacaaggacaatgggtgtcagtcaagccgattccaaactctttggttgtgaatgttggagatgctcttgagatatggagcaacgggaagtacaaaagcattgaacacagagctgtgacaaacgaaagcaaggcaaggatgtcttatgcatcatttatctttccacatgtcgatgtggaaattgagccgttcgatcagatactggagtcatcagggaccattcagatgtataagaaggtcaaatatggagattatttgattcaatgcttgaagaggaaaatggaggggaaggaacacactcaaaatgcaaaattaggaagtacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

40.72

Weight (kDa)

5.49

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 644
AccB1I GGYRCC 1 cut(s) 713
AciI CCGC 1 cut(s) 704
AclWI GGATC 3 cut(s) 70, 234, 556
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 5 cut(s) 89, 684, 726, 857, 1087
AfiI CCNNNNNNNGG 3 cut(s) 429, 471, 501
AflIII ACRYGT 1 cut(s) 931
AgsI TTSAA 6 cut(s) 47, 326, 511, 869, 1028, 1036
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 3 cut(s) 214, 259, 878
AluI AGCT 3 cut(s) 214, 259, 878
Alw21I GWGCWC 1 cut(s) 700
Alw44I GTGCAC 1 cut(s) 696
AlwI GGATC 3 cut(s) 70, 234, 556
AlwNI CAGNNNCTG 1 cut(s) 967
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 488
ApaLI GTGCAC 1 cut(s) 696
ApeKI GCWGC 2 cut(s) 632, 635
ApoI RAATTY 1 cut(s) 351
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 2 cut(s) 432, 981
AsuII TTCGAA 1 cut(s) 763
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 432, 981
BaeGI GKGCMC 2 cut(s) 204, 700
BaeI ACNNNNGTAYC 2 cut(s) 956, 989
BalI TGGCCA 1 cut(s) 490
BanI GGYRCC 1 cut(s) 713
BauI CACGAG 2 cut(s) 203, 378
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 2 cut(s) 644, 647
BccI CCATC 4 cut(s) 179, 299, 469, 586
BceAI ACGGC 1 cut(s) 937
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 3 cut(s) 141, 534, 686
BglII AGATCT 1 cut(s) 569
BisI GCNGC 2 cut(s) 633, 636
BlsI GCNGC 2 cut(s) 634, 637
BmcAI AGTACT 2 cut(s) 684, 1087
Bme18I GGWCC 2 cut(s) 432, 981
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 432, 981
BmiI GGNNCC 4 cut(s) 36, 476, 715, 982
BmsI GCATC 5 cut(s) 29, 628, 697, 817, 923
BpmI CTGGAG 1 cut(s) 989
Bpu14I TTCGAA 1 cut(s) 763
BpuEI CTTGAG 3 cut(s) 178, 500, 854
BsaJI CCNNGG 1 cut(s) 500
Bsc4I CCNNNNNNNGG 3 cut(s) 429, 471, 501
Bse1I ACTGG 6 cut(s) 29, 57, 228, 434, 447, 972
Bse3DI GCAATG 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 7 cut(s) 174, 310, 461, 597, 607, 712, 909
BseLI CCNNNNNNNGG 3 cut(s) 429, 471, 501
BseMI GCAATG 1 cut(s) 638
BseNI ACTGG 6 cut(s) 29, 57, 228, 434, 447, 972
BseRI GAGGAG 3 cut(s) 221, 224, 572
BseSI GKGCMC 2 cut(s) 204, 700
BseXI GCAGC 2 cut(s) 644, 647
BshFI GGCC 1 cut(s) 490
BshNI GGYRCC 1 cut(s) 713
BsiHKAI GWGCWC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 994
BslI CCNNNNNNNGG 3 cut(s) 429, 471, 501
BsmFI GGGAC 1 cut(s) 994
BsnI GGCC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 763
Bsp1286I GDGCHC 2 cut(s) 204, 700
Bsp143I GATC 6 cut(s) 75, 106, 226, 561, 569, 958
BspACI CCGC 1 cut(s) 704
BspANI GGCC 1 cut(s) 490
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 36, 476, 715, 982
BspPI GGATC 3 cut(s) 70, 234, 556
BspQI GCTCTTC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 763
BspT107I GGYRCC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 638
BsrI ACTGG 6 cut(s) 29, 57, 228, 434, 447, 972
BssECI CCNNGG 1 cut(s) 500
BssMI GATC 6 cut(s) 75, 106, 226, 561, 569, 958
BssSI CACGAG 2 cut(s) 203, 378
BssT1I CCWWGG 1 cut(s) 500
Bst2BI CACGAG 2 cut(s) 203, 378
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 3 cut(s) 333, 408, 1031
BstBI TTCGAA 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 235, 712
BstDEI CTNAG 2 cut(s) 566, 692
BstF5I GGATG 7 cut(s) 174, 310, 461, 597, 607, 712, 909
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 6 cut(s) 78, 109, 229, 564, 572, 961
BstMBI GATC 6 cut(s) 75, 106, 226, 561, 569, 958
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNSI RCATGY 2 cut(s) 704, 935
BstSLI GKGCMC 2 cut(s) 204, 700
BstV1I GCAGC 2 cut(s) 644, 647
BstX2I RGATCY 3 cut(s) 226, 561, 569
BstYI RGATCY 3 cut(s) 226, 561, 569
BsuRI GGCC 1 cut(s) 490
BtsCI GGATG 7 cut(s) 174, 310, 461, 597, 607, 712, 909
BtsIMutI CAGTG 2 cut(s) 36, 440
Cac8I GCNNGC 2 cut(s) 235, 712
CaiI CAGNNNCTG 1 cut(s) 967
CciI TCATGA 1 cut(s) 145
CfoI GCGC 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 432, 981
CseI GACGC 1 cut(s) 446
Csp6I GTAC 5 cut(s) 88, 683, 725, 856, 1086
CviAII CATG 7 cut(s) 146, 269, 298, 358, 663, 701, 932
CviQI GTAC 5 cut(s) 88, 683, 725, 856, 1086
DdeI CTNAG 2 cut(s) 566, 692
DpnI GATC 6 cut(s) 77, 108, 228, 563, 571, 960
DpnII GATC 6 cut(s) 75, 106, 226, 561, 569, 958
DraI TTTAAA 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 3 cut(s) 333, 408, 1031
EarI CTCTTC 3 cut(s) 333, 408, 1031
Eco130I CCWWGG 1 cut(s) 500
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 432, 981
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 80
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 500
EcoT22I ATGCAT 2 cut(s) 70, 916
ErhI CCWWGG 1 cut(s) 500
FaeI CATG 7 cut(s) 149, 272, 301, 361, 666, 704, 935
FalI AAGNNNNNCTT 2 cut(s) 892, 924
FaqI GGGAC 1 cut(s) 994
FatI CATG 7 cut(s) 145, 268, 297, 357, 662, 700, 931
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 633, 636
FokI GGATG 7 cut(s) 161, 317, 448, 604, 614, 719, 916
Fsp4HI GCNGC 2 cut(s) 633, 636
FspBI CTAG 3 cut(s) 141, 534, 686
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 1 cut(s) 644
GluI GCNGC 2 cut(s) 633, 636
GsuI CTGGAG 1 cut(s) 989
HaeIII GGCC 1 cut(s) 490
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 645
Hin1II CATG 7 cut(s) 149, 272, 301, 361, 666, 704, 935
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 6 cut(s) 249, 507, 760, 796, 971, 1024
Hpy166II GTNNAC 2 cut(s) 363, 698
Hpy188I TCNGA 5 cut(s) 160, 436, 752, 963, 990
Hpy188III TCNNGA 5 cut(s) 11, 47, 146, 623, 833
Hpy8I GTNNAC 2 cut(s) 363, 698
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 5 cut(s) 295, 377, 592, 994, 1048
HpyCH4III ACNGT 1 cut(s) 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 2 cut(s) 566, 692
Hsp92II CATG 7 cut(s) 149, 272, 301, 361, 666, 704, 935
HspAI GCGC 1 cut(s) 643
Kzo9I GATC 6 cut(s) 75, 106, 226, 561, 569, 958
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 211, 843
Lsp1109I GCAGC 2 cut(s) 644, 647
LweI GCATC 5 cut(s) 29, 628, 697, 817, 923
MaeI CTAG 3 cut(s) 141, 534, 686
MaeIII GTNAC 2 cut(s) 406, 880
MalI GATC 6 cut(s) 77, 108, 228, 563, 571, 960
MboI GATC 6 cut(s) 75, 106, 226, 561, 569, 958
MboII GAAGA 8 cut(s) 147, 244, 350, 355, 425, 599, 749, 1048
MflI RGATCY 3 cut(s) 226, 561, 569
MhlI GDGCHC 2 cut(s) 204, 700
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 3 cut(s) 351, 945, 1076
MluNI TGGCCA 1 cut(s) 490
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 3 cut(s) 459, 532, 802
MnlI CCTC 9 cut(s) 199, 202, 434, 508, 517, 550, 669, 1032, 1042
Mox20I TGGCCA 1 cut(s) 490
Mph1103I ATGCAT 2 cut(s) 70, 916
MscI TGGCCA 1 cut(s) 490
MseI TTAA 7 cut(s) 71, 95, 216, 264, 543, 581, 1090
MslI CAYNNNNRTG 3 cut(s) 705, 936, 989
Msp20I TGGCCA 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 524
NdeI CATATG 1 cut(s) 529
NdeII GATC 6 cut(s) 75, 106, 226, 561, 569, 958
NlaIII CATG 7 cut(s) 149, 272, 301, 361, 666, 704, 935
NlaIV GGNNCC 4 cut(s) 36, 476, 715, 982
NmuCI GTSAC 1 cut(s) 880
NsbI TGCGCA 1 cut(s) 644
NsiI ATGCAT 2 cut(s) 70, 916
NspI RCATGY 2 cut(s) 704, 935
NspV TTCGAA 1 cut(s) 763
PagI TCATGA 1 cut(s) 145
PciI ACATGT 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 5 cut(s) 249, 507, 760, 796, 1024
PkrI GCNGC 2 cut(s) 634, 637
PleI GAGTC 1 cut(s) 979
PpsI GAGTC 1 cut(s) 979
PscI ACATGT 1 cut(s) 931
PshBI ATTAAT 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 36, 476, 715, 982
PspPI GGNCC 2 cut(s) 432, 981
PstNI CAGNNNCTG 1 cut(s) 967
PsuI RGATCY 3 cut(s) 226, 561, 569
RsaI GTAC 5 cut(s) 89, 684, 726, 857, 1087
RsaNI GTAC 5 cut(s) 88, 683, 725, 856, 1086
RseI CAYNNNNRTG 3 cut(s) 705, 936, 989
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 7 cut(s) 71, 95, 216, 264, 543, 581, 1090
SatI GCNGC 2 cut(s) 633, 636
Sau3AI GATC 6 cut(s) 75, 106, 226, 561, 569, 958
Sau96I GGNCC 2 cut(s) 432, 981
ScaI AGTACT 2 cut(s) 684, 1087
SchI GAGTC 1 cut(s) 980
SduI GDGCHC 2 cut(s) 204, 700
SetI ASST 7 cut(s) 93, 216, 261, 480, 691, 880, 1005
SfaNI GCATC 5 cut(s) 29, 628, 697, 817, 923
SfuI TTCGAA 1 cut(s) 763
SinI GGWCC 2 cut(s) 432, 981
SmiMI CAYNNNNRTG 3 cut(s) 705, 936, 989
SmlI CTYRAG 3 cut(s) 193, 479, 833
SmoI CTYRAG 3 cut(s) 193, 479, 833
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 351, 945, 1076
SsiI CCGC 1 cut(s) 704
SspMI CTAG 3 cut(s) 141, 534, 686
StyI CCWWGG 1 cut(s) 500
TaaI ACNGT 1 cut(s) 724
TaqI TCGA 4 cut(s) 426, 763, 936, 957
TasI AATT 3 cut(s) 351, 945, 1076
TatI WGTACW 4 cut(s) 682, 724, 855, 1085
TfiI GAWTC 5 cut(s) 249, 507, 760, 796, 1024
Tru1I TTAA 7 cut(s) 71, 95, 216, 264, 543, 581, 1090
Tru9I TTAA 7 cut(s) 71, 95, 216, 264, 543, 581, 1090
TscAI CASTG 2 cut(s) 36, 447
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 2 cut(s) 632, 635
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 36, 447
VneI GTGCAC 1 cut(s) 696
VpaK11BI GGWCC 2 cut(s) 432, 981
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 1 cut(s) 351
XceI RCATGY 2 cut(s) 704, 935
XspI CTAG 3 cut(s) 141, 534, 686
ZrmI AGTACT 2 cut(s) 684, 1087
Zsp2I ATGCAT 2 cut(s) 70, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.