FvH4_6g13300

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000451
Physical Location & Seq
Forward (+)
8097165 .. 8098662
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13300.t1

Sequence Viewer

Length: 1098 bp
ATGAGTTCAACTACAGATGTAGGATTAATTCAAGTAGAAGTTGCACCAACTTATGCTCCATCTCTGCCGGTGCCAAATGTTCAAGAAATTGTGAGGACATACCCTTTTCATGTCCCTGACAGATACCTTCGGGATCAAGAAGAGATTCCAGAGAATATAGATCTTACTTCTTCTAACCTTTCTTCGGAGATTCCTATCATTGATTTTTCTCTTCTTTCGAAAGGGAACAAGGAGGAGCTTCACAAATTGGACGTTGCTTGCGAAGAATGGGGATTCTTTCAGATAGTGAATCATGGAGTGGCAAAAGAAGTGTTGTGGGGCATGAAGGATGTTGCGGCCAAGTTTTTTGAGCTTCCTCTGGAAGAGAAGAATAAGGTTTCTATGCCTTCAGATGACATACAAGGCTACGGCCATGCTTATGTGGTTTCTGAAGACCAGATTCTGGATTGGTCTGATGCATTGATTCTCAACGTGTACCCAGTTCACTATAGAAACCTTAAGTTTTGGCCAGCAGAACCAGAGAATTTCCAGGAGGTTCTTGAGTCATATTCTGGTGAAGTTAAAAGAGTAGGAGAGGAGCTTCTAAGGTCTCTATCGAAACTCATGGGCATGGAGAAGGATACTCTTATTGGCCTCCATAACCAGTTGTTACAAGCTTTGAGGGTGAACTACTATCCTCCATGCTCCACGCCTCATAAAGTAGTAGGACTGAGTCCACACTCGGACACGAGCACCATAACCATACTTATGCAAGAAGACGGTGTCACCGGTCTGCAGATTCGAAAAGGAGGAGAATGGGTCTCAGTCGAGCCAATTCCAGATGCTCTTGTTGTGAATGTTGGGGATGTTCTTGAGATATGGACTAATGGGAAGTACAAGAGCATTGAGCACAGAGCTGTGACGACCAAAAATAAGGAGAGGTTATCCTATGCATCATTTCTTTTTCCACATTTTGATGTGGAGATTAAACCAGTTTATGATATCGCTGTGTCAGATTTGACGTACAAGAAAGTCAGATACGGAGATTATCTTAGACAATCCATGAAGATGAAGCACGAGGGGAAGGCACACACTGAAATGGCGAAGATCAGAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

366

Amino Acids

41.5

Weight (kDa)

5.3

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 64 - 172 2.2e-29 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 218 - 316 1.2e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 442
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 3 cut(s) 336, 409, 506
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 2 cut(s) 372, 450
AfaI GTAC 3 cut(s) 476, 875, 1004
AfiI CCNNNNNNNGG 2 cut(s) 184, 442
AflII CTTAAG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 471
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 3 cut(s) 9, 32, 83
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 6 cut(s) 238, 352, 580, 656, 896, 1095
AluI AGCT 6 cut(s) 238, 352, 580, 656, 896, 1095
Alw21I GWGCWC 2 cut(s) 734, 891
Alw26I GTCTC 2 cut(s) 594, 805
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 4 cut(s) 336, 409, 506, 631
ApoI RAATTY 1 cut(s) 523
AseI ATTAAT 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 566, 676, 757
AsuII TTCGAA 2 cut(s) 218, 781
BalI TGGCCA 1 cut(s) 508
BanI GGYRCC 1 cut(s) 70
BauI CACGAG 2 cut(s) 727, 1055
BbsI GAAGAC 2 cut(s) 438, 762
Bbv12I GWGCWC 2 cut(s) 734, 891
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 530
BciVI GTATCC 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 594, 805
BfmI CTRYAG 3 cut(s) 12, 487, 773
BfrI CTTAAG 1 cut(s) 497
BfuI GTATCC 1 cut(s) 613
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 530
BmrI ACTGGG 1 cut(s) 473
BmsI GCATC 3 cut(s) 445, 811, 941
BmuI ACTGGG 1 cut(s) 473
BpiI GAAGAC 2 cut(s) 438, 762
Bpu14I TTCGAA 2 cut(s) 218, 781
BpuEI CTTGAG 2 cut(s) 560, 872
BsaBI GATNNNNATC 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 594, 805
BsaWI WCCGGW 1 cut(s) 767
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 783, 813
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 442
Bse118I RCCGGY 2 cut(s) 67, 767
Bse1I ACTGG 3 cut(s) 479, 643, 971
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 530
BseGI GGATG 2 cut(s) 334, 850
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 184, 442
BseMII CTCAG 2 cut(s) 701, 816
BseNI ACTGG 3 cut(s) 479, 643, 971
BseRI GAGGAG 3 cut(s) 248, 590, 804
BshFI GGCC 4 cut(s) 338, 411, 508, 633
BshNI GGYRCC 1 cut(s) 70
BshTI ACCGGT 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 734, 891
BsiSI CCGG 2 cut(s) 68, 768
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 184, 442
BsmAI GTCTC 2 cut(s) 594, 805
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 4 cut(s) 338, 411, 508, 633
Bso31I GGTCTC 2 cut(s) 594, 805
Bsp119I TTCGAA 2 cut(s) 218, 781
Bsp1286I GDGCHC 2 cut(s) 734, 891
Bsp143I GATC 3 cut(s) 133, 160, 1086
BspACI CCGC 1 cut(s) 335
BspANI GGCC 4 cut(s) 338, 411, 508, 633
BspCNI CTCAG 2 cut(s) 702, 815
BspLI GGNNCC 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 777
BspPI GGATC 1 cut(s) 141
BspT104I TTCGAA 2 cut(s) 218, 781
BspT107I GGYRCC 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 497
BspTNI GGTCTC 2 cut(s) 594, 805
BsrFI RCCGGY 2 cut(s) 67, 767
BsrI ACTGG 3 cut(s) 479, 643, 971
BssAI RCCGGY 2 cut(s) 67, 767
BssMI GATC 3 cut(s) 133, 160, 1086
BssSI CACGAG 2 cut(s) 727, 1055
Bst2BI CACGAG 2 cut(s) 727, 1055
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 1 cut(s) 761
Bst6I CTCTTC 3 cut(s) 135, 216, 357
BstAFI CTTAAG 1 cut(s) 497
BstBI TTCGAA 2 cut(s) 218, 781
BstC8I GCNNGC 2 cut(s) 259, 510
BstDEI CTNAG 4 cut(s) 584, 710, 802, 1031
BstF5I GGATG 2 cut(s) 334, 850
BstKTI GATC 3 cut(s) 136, 163, 1089
BstMAI GTCTC 2 cut(s) 594, 805
BstMBI GATC 3 cut(s) 133, 160, 1086
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 528
BstSFI CTRYAG 3 cut(s) 12, 487, 773
BstV2I GAAGAC 2 cut(s) 438, 762
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 4 cut(s) 338, 411, 508, 633
BtsCI GGATG 2 cut(s) 334, 850
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 2 cut(s) 259, 510
CaiI CAGNNNCTG 1 cut(s) 442
Cfr10I RCCGGY 2 cut(s) 67, 767
Csp6I GTAC 3 cut(s) 475, 874, 1003
CspAI ACCGGT 1 cut(s) 767
CviAII CATG 8 cut(s) 110, 293, 322, 413, 604, 610, 681, 1042
CviQI GTAC 3 cut(s) 475, 874, 1003
DdeI CTNAG 4 cut(s) 584, 710, 802, 1031
DpnI GATC 3 cut(s) 135, 162, 1088
DpnII GATC 3 cut(s) 133, 160, 1086
EaeI YGGCCR 3 cut(s) 336, 409, 506
Eam1104I CTCTTC 3 cut(s) 135, 216, 357
EarI CTCTTC 3 cut(s) 135, 216, 357
Eco31I GGTCTC 2 cut(s) 594, 805
Eco32I GATATC 1 cut(s) 982
Eco57I CTGAAG 2 cut(s) 372, 450
EcoRII CCWGG 1 cut(s) 528
EcoRV GATATC 1 cut(s) 982
EcoT22I ATGCAT 2 cut(s) 460, 934
FaeI CATG 8 cut(s) 113, 296, 325, 416, 607, 613, 684, 1045
FaqI GGGAC 1 cut(s) 98
FatI CATG 8 cut(s) 109, 292, 321, 412, 603, 609, 680, 1041
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 341, 857
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 4 cut(s) 338, 411, 508, 633
HapII CCGG 2 cut(s) 68, 768
Hin1II CATG 8 cut(s) 113, 296, 325, 416, 607, 613, 684, 1045
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 9 cut(s) 145, 190, 273, 289, 439, 463, 542, 712, 778
HpaII CCGG 2 cut(s) 68, 768
HphI GGTGA 3 cut(s) 566, 676, 757
Hpy166II GTNNAC 4 cut(s) 475, 484, 667, 716
Hpy188I TCNGA 9 cut(s) 187, 282, 391, 430, 454, 724, 994, 1016, 1091
Hpy188III TCNNGA 9 cut(s) 83, 131, 137, 149, 359, 443, 539, 818, 851
Hpy8I GTNNAC 4 cut(s) 475, 484, 667, 716
HpyAV CCTTC 5 cut(s) 137, 319, 396, 610, 1057
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4IV ACGT 3 cut(s) 252, 471, 1001
HpyCH4V TGCA 5 cut(s) 44, 458, 751, 775, 932
HpyF3I CTNAG 4 cut(s) 584, 710, 802, 1031
HpySE526I ACGT 3 cut(s) 252, 471, 1001
Hsp92II CATG 8 cut(s) 113, 296, 325, 416, 607, 613, 684, 1045
Kzo9I GATC 3 cut(s) 133, 160, 1086
LmnI GCTCC 4 cut(s) 61, 235, 577, 689
LweI GCATC 3 cut(s) 445, 811, 941
MaeII ACGT 3 cut(s) 252, 471, 1001
MaeIII GTNAC 3 cut(s) 648, 763, 898
MalI GATC 3 cut(s) 135, 162, 1088
MboI GATC 3 cut(s) 133, 160, 1086
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 734, 891
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 5 cut(s) 27, 87, 245, 523, 813
MluNI TGGCCA 1 cut(s) 508
MlyI GAGTC 2 cut(s) 551, 721
Mox20I TGGCCA 1 cut(s) 508
Mph1103I ATGCAT 2 cut(s) 460, 934
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 508
MseI TTAA 4 cut(s) 26, 498, 561, 966
MslI CAYNNNNRTG 6 cut(s) 417, 608, 746, 954, 1046, 1076
Msp20I TGGCCA 1 cut(s) 508
MspCI CTTAAG 1 cut(s) 497
MspI CCGG 2 cut(s) 68, 768
MspR9I CCNGG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 530
NdeII GATC 3 cut(s) 133, 160, 1086
NlaIII CATG 8 cut(s) 113, 296, 325, 416, 607, 613, 684, 1045
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 2 cut(s) 763, 898
NsiI ATGCAT 2 cut(s) 460, 934
NspV TTCGAA 2 cut(s) 218, 781
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 7 cut(s) 145, 190, 273, 289, 439, 463, 778
PflFI GACNNNGTC 2 cut(s) 711, 761
PflMI CCANNNNNTGG 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 528
PinAI ACCGGT 1 cut(s) 767
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 550, 720
PpsI GAGTC 2 cut(s) 550, 720
PshBI ATTAAT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 777
PstNI CAGNNNCTG 1 cut(s) 442
PsuI RGATCY 1 cut(s) 160
PsyI GACNNNGTC 2 cut(s) 711, 761
RsaI GTAC 3 cut(s) 476, 875, 1004
RsaNI GTAC 3 cut(s) 475, 874, 1003
RseI CAYNNNNRTG 6 cut(s) 417, 608, 746, 954, 1046, 1076
SaqAI TTAA 4 cut(s) 26, 498, 561, 966
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 3 cut(s) 133, 160, 1086
SchI GAGTC 2 cut(s) 551, 721
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 2 cut(s) 734, 891
SfaNI GCATC 3 cut(s) 445, 811, 941
SfcI CTRYAG 3 cut(s) 12, 487, 773
SfuI TTCGAA 2 cut(s) 218, 781
SmiMI CAYNNNNRTG 6 cut(s) 417, 608, 746, 954, 1046, 1076
SmlI CTYRAG 3 cut(s) 497, 539, 851
SmoI CTYRAG 3 cut(s) 497, 539, 851
Sse9I AATT 5 cut(s) 27, 87, 245, 523, 813
SsiI CCGC 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 761
TaiI ACGT 3 cut(s) 255, 474, 1004
TaqI TCGA 4 cut(s) 218, 596, 781, 807
TasI AATT 5 cut(s) 27, 87, 245, 523, 813
TatI WGTACW 1 cut(s) 873
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 7 cut(s) 145, 190, 273, 289, 439, 463, 778
Tru1I TTAA 4 cut(s) 26, 498, 561, 966
Tru9I TTAA 4 cut(s) 26, 498, 561, 966
TscAI CASTG 1 cut(s) 1078
TseFI GTSAC 2 cut(s) 763, 898
Tsp45I GTSAC 2 cut(s) 763, 898
TspDTI ATGAA 4 cut(s) 98, 338, 1058, 1064
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 1 cut(s) 1078
Tth111I GACNNNGTC 2 cut(s) 711, 761
Van91I CCANNNNNTGG 1 cut(s) 442
Vha464I CTTAAG 1 cut(s) 497
VspI ATTAAT 1 cut(s) 26
XapI RAATTY 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 144
Zsp2I ATGCAT 2 cut(s) 460, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.