Rorug03G0080400

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000451
Physical Location & Seq
Reverse (-)
6292738 .. 6295705
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0080400.1

Sequence Viewer

Length: 426 bp
ATGGCAGCGATTTACAGCCTCTACATCATCAACAAATCAGGCGGCTTGATCTTCTACAAGGACTATGGATCGGCGGGAAGGATGGACACTAATGATAGCTTGAGGCTTGCAAGCTTGTGGCACTCAATGCACGCCATTTCTCAGCAATTGTCTCCGGTTTCCGGTTGCGCCGGCATCGAGCTTCTCCAAGCTGATACCTTTGATCTTCATTGCTTCCAGTCACTTACCGGGACAAAGTTCTTTGTTGTCAGTGAGCCTGGTACGCAGCACATGGAAGGTCTCTTGAAACACATCTATGAGCTGTACACTGATTATGTCTTGAAGAACCCTTTCTATGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGATATGAACCTAACACAGGCAATACAAAAGGATCGTGTTGCCTTGTTGGCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

5.65

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sybindin PF04099 4 - 133 5.4e-52 Sybindin-like family
Sedlin_N PF04628 17 - 133 1.5e-07 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 74
AclWI GGATC 2 cut(s) 76, 408
AfaI GTAC 2 cut(s) 262, 305
AfiI CCNNNNNNNGG 2 cut(s) 161, 385
AgsI TTSAA 2 cut(s) 286, 322
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 6 cut(s) 99, 114, 181, 191, 301, 364
AluI AGCT 6 cut(s) 99, 114, 181, 191, 301, 364
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 156, 284
AlwI GGATC 2 cut(s) 76, 408
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 2 cut(s) 5, 265
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 418
AsuC2I CCSGG 1 cut(s) 229
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 17, 277
BccI CCATC 2 cut(s) 76, 334
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 156, 284
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 3 cut(s) 6, 43, 266
BlsI GCNGC 3 cut(s) 7, 44, 267
Bme1390I CCNGG 2 cut(s) 229, 258
BmgT120I GGNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 229, 258
BmsI GCATC 2 cut(s) 183, 336
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 284
BsaWI WCCGGW 2 cut(s) 154, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 385
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 161, 385
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 17, 277
BshFI GGCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 4 cut(s) 155, 162, 171, 228
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 161, 385
BsmAI GTCTC 2 cut(s) 156, 284
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 4 cut(s) 48, 68, 202, 400
BspACI CCGC 2 cut(s) 42, 74
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 2 cut(s) 76, 408
BspTNI GGTCTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 4 cut(s) 48, 68, 202, 400
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 5 cut(s) 108, 112, 132, 172, 362
BstDEI CTNAG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 4 cut(s) 51, 71, 205, 403
BstMAI GTCTC 2 cut(s) 156, 284
BstMBI GATC 4 cut(s) 48, 68, 202, 400
BstMWI GCNNNNNNNGC 3 cut(s) 127, 262, 416
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 227, 256
BstV1I GCAGC 2 cut(s) 17, 277
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 256, 306
Cac8I GCNNGC 5 cut(s) 108, 112, 132, 172, 362
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 2 cut(s) 261, 304
CviAII CATG 1 cut(s) 271
CviQI GTAC 2 cut(s) 261, 304
DdeI CTNAG 1 cut(s) 141
DpnI GATC 4 cut(s) 50, 70, 204, 402
DpnII GATC 4 cut(s) 48, 68, 202, 400
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 1 cut(s) 274
FaiI YATR 7 cut(s) 66, 272, 297, 315, 336, 353, 374
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 270
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 6, 43, 266
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 6, 43, 266
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 6, 43, 266
HaeIII GGCC 1 cut(s) 419
HapII CCGG 4 cut(s) 155, 162, 171, 228
HhaI GCGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 112
HpaII CCGG 4 cut(s) 155, 162, 171, 228
Hpy166II GTNNAC 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 283, 319
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 72, 269
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 110, 130
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 262, 416
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 168
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 4 cut(s) 48, 68, 202, 400
LpnPI CCDG 9 cut(s) 24, 168, 175, 184, 230, 241, 243, 270, 371
Lsp1109I GCAGC 2 cut(s) 17, 277
LweI GCATC 2 cut(s) 183, 336
MaeIII GTNAC 1 cut(s) 219
MalI GATC 4 cut(s) 50, 70, 204, 402
MboI GATC 4 cut(s) 48, 68, 202, 400
MboII GAAGA 3 cut(s) 43, 197, 334
MfeI CAATTG 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 1 cut(s) 146
MnlI CCTC 2 cut(s) 29, 96
MroNI GCCGGC 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 4 cut(s) 155, 162, 171, 228
MspR9I CCNGG 2 cut(s) 229, 258
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 127, 262, 416
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 229
NdeII GATC 4 cut(s) 48, 68, 202, 400
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 329
PkrI GCNGC 3 cut(s) 7, 44, 267
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 418
RsaI GTAC 2 cut(s) 262, 305
RsaNI GTAC 2 cut(s) 261, 304
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 366
SatI GCNGC 3 cut(s) 6, 43, 266
Sau3AI GATC 4 cut(s) 48, 68, 202, 400
Sau96I GGNCC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 229, 258
SduI GDGCHC 1 cut(s) 366
SetI ASST 9 cut(s) 101, 116, 183, 193, 200, 280, 303, 366, 381
SfaNI GCATC 2 cut(s) 183, 336
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 42, 74
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 227, 256
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 45
TscAI CASTG 2 cut(s) 256, 313
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 2 cut(s) 5, 265
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 197, 389
TspRI CASTG 2 cut(s) 256, 313
XagI CCTNNNNNAGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.