RchiOBHm_Chr3g0466181

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000451
Physical Location & Seq
Forward (+)
12699693 .. 12702158
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43228

Sequence Viewer

Length: 1065 bp
ATGGGATCAAACTCAGCTCTGTATGACCCATGTCCGCCACTACCAAATGTTCAAGAAATGGTGAAGAGTGACCCTTTTCAGGTGCCTGAAAGATACATCAGGGATGAAAAGGACATTGCAAACGATGCCGGTTTGTGCTCTCAGCTTTCCTCCGAAGTTCCCATCGTCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTCACAAGCTGGACCAGGCTTGCGAGGAATGGGGTTTCTTTCAGATGGTAAATCATGGAGTGGCAACAGAAATAACGAAGGGCTTGAAGGATTCAGCGCTGAAGTTCTTCGAACTTCCATTAGAAGAGAAGAACAAAATTGCTATGCCACCAAATGACATACAAGGCTATGGCCATTCCCATGTGGATCAGGTCCTGGATTGGTCTGACAAACTTGTTCTTGTTGTTTACCCACAACAGCATAGAAAGCTCGATGTTTGGCCACCAAATCCATTCAAGGAGGCTATTGAGACATATTCTAGTGAACTTAGACGAATTGGAGAGGAGCTCCTGAGGTCTGTCTCTTTAATAATGGGGATGGAGAAGGATGCACTCCTCCTGTTACATCAAGAGTTGGTACAACCTATGTCTGTGGCGTACTATCCTCCCTGCTTCATGTCTGATAAAGTAATGGGTCTCAGTCCACATTCAGACAAAGGCACCTTGGGTGTACTTATGCAAGAAGAAGATGTACCGGGACTCCAAATCAAACACGAAGAAAAATGGGTACCGATCAAGTCATTGCCCAATGCTTTCGTTGTGAATGTTGGAGATATTATCGAGATTTGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTGGTAACAAACAAAAGCAAGGCGAGGATATCTTATTCAACCTTTTATATACCACATAGAAATGTTGATATTGAACCCCTTAATCAAATGGTACTTGAGTCTCCAGGGTCCCTTCCATTGTACAAGAAAGTCACTTACGGAGATTATCTGAAGCAAACCCAGAAGATGAAAAAAGAAGGAAAGGCACATGTCACTGAAGTTGCCAAGATTGCCAATTAA

Protein Analysis

354

Amino Acids

40.13

Weight (kDa)

5.62

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 157 2.4e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 203 - 299 1.5e-28 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 3 cut(s) 82, 683, 751
AciI CCGC 1 cut(s) 35
AclWI GGATC 2 cut(s) 13, 399
AcoI YGGCCR 2 cut(s) 376, 464
AcuI CTGAAG 3 cut(s) 326, 1016, 1062
AdeI CACNNNGTG 1 cut(s) 847
AfaI GTAC 8 cut(s) 603, 623, 696, 717, 753, 827, 939, 968
AfeI AGCGCT 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 1033
AgsI TTSAA 6 cut(s) 53, 292, 481, 839, 885, 920
AjnI CCWGG 3 cut(s) 219, 399, 949
AluBI AGCT 6 cut(s) 17, 145, 205, 214, 454, 532
AluI AGCT 6 cut(s) 17, 145, 205, 214, 454, 532
Alw21I GWGCWC 2 cut(s) 140, 534
Alw26I GTCTC 4 cut(s) 488, 550, 665, 951
AlwI GGATC 2 cut(s) 13, 399
AlwNI CAGNNNCTG 1 cut(s) 400
Aor51HI AGCGCT 1 cut(s) 303
AoxI GGCC 2 cut(s) 376, 464
Asp700I GAANNNNTTC 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 751
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 217, 397, 954
AsuC2I CCSGG 1 cut(s) 720
AsuHPI GGTGA 1 cut(s) 73
AsuII TTCGAA 1 cut(s) 315
AvaII GGWCC 3 cut(s) 217, 397, 954
AxyI CCTNAGG 1 cut(s) 536
BaeI ACNNNNGTAYC 2 cut(s) 929, 962
BalI TGGCCA 2 cut(s) 378, 466
BanI GGYRCC 3 cut(s) 82, 683, 751
BanII GRGCYC 1 cut(s) 534
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
Bbv12I GWGCWC 2 cut(s) 140, 534
BccI CCATC 3 cut(s) 170, 244, 556
BciT130I CCWGG 3 cut(s) 221, 401, 951
BcnI CCSGG 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 488, 550, 665, 951
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 305
Bme1390I CCNGG 4 cut(s) 221, 401, 720, 951
Bme18I GGWCC 3 cut(s) 217, 397, 954
BmgT120I GGNCC 3 cut(s) 217, 397, 954
BmiI GGNNCC 5 cut(s) 84, 685, 753, 955, 956
BmrFI CCNGG 4 cut(s) 221, 401, 720, 951
BmsI GCATC 2 cut(s) 115, 562
BoxI GACNNNNGTC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 516, 548
BpmI CTGGAG 1 cut(s) 933
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 687, 950
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 128
Bse21I CCTNAGG 1 cut(s) 536
Bse3DI GCAATG 2 cut(s) 114, 764
BseBI CCWGG 3 cut(s) 221, 401, 951
BseDI CCNNGG 2 cut(s) 687, 950
BseGI GGATG 3 cut(s) 109, 567, 577
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 114, 764
BseMII CTCAG 4 cut(s) 27, 155, 527, 676
BseRI GAGGAG 3 cut(s) 215, 542, 569
BshFI GGCC 2 cut(s) 378, 466
BshNI GGYRCC 3 cut(s) 82, 683, 751
BsiHKAI GWGCWC 2 cut(s) 140, 534
BsiSI CCGG 2 cut(s) 129, 719
BslFI GGGAC 2 cut(s) 735, 940
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 4 cut(s) 488, 550, 665, 951
BsmFI GGGAC 2 cut(s) 735, 940
BsnI GGCC 2 cut(s) 378, 466
Bso31I GGTCTC 1 cut(s) 665
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 140, 534
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 3 cut(s) 5, 391, 756
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 378, 466
BspCNI CTCAG 4 cut(s) 26, 154, 528, 675
BspLI GGNNCC 5 cut(s) 84, 685, 753, 955, 956
BspPI GGATC 2 cut(s) 13, 399
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 3 cut(s) 82, 683, 751
BspTNI GGTCTC 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 114, 764
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 966
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 687, 950
BssMI GATC 3 cut(s) 5, 391, 756
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 3 cut(s) 221, 401, 951
Bst6I CTCTTC 2 cut(s) 59, 324
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 966
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 5 cut(s) 13, 141, 512, 536, 662
BstF5I GGATG 3 cut(s) 109, 567, 577
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 8, 394, 759
BstMAI GTCTC 4 cut(s) 488, 550, 665, 951
BstMBI GATC 3 cut(s) 5, 391, 756
BstMWI GCNNNNNNNGC 4 cut(s) 125, 211, 451, 1055
BstNI CCWGG 3 cut(s) 221, 401, 951
BstNSI RCATGY 1 cut(s) 1037
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 4 cut(s) 219, 399, 718, 949
Bsu36I CCTNAGG 1 cut(s) 536
BsuRI GGCC 2 cut(s) 378, 466
BtsCI GGATG 3 cut(s) 109, 567, 577
BtsIMutI CAGTG 1 cut(s) 1038
Cac8I GCNNGC 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 217, 397, 954
Csp6I GTAC 8 cut(s) 602, 622, 695, 716, 752, 826, 938, 967
CviAII CATG 5 cut(s) 30, 260, 386, 640, 1034
CviQI GTAC 8 cut(s) 602, 622, 695, 716, 752, 826, 938, 967
DdeI CTNAG 5 cut(s) 13, 141, 512, 536, 662
DpnI GATC 3 cut(s) 7, 393, 758
DpnII GATC 3 cut(s) 5, 391, 756
DraIII CACNNNGTG 1 cut(s) 847
EaeI YGGCCR 2 cut(s) 376, 464
Eam1104I CTCTTC 2 cut(s) 59, 324
EarI CTCTTC 2 cut(s) 59, 324
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 665
Eco32I GATATC 1 cut(s) 876
Eco47I GGWCC 3 cut(s) 217, 397, 954
Eco47III AGCGCT 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 3 cut(s) 326, 1016, 1062
Eco81I CCTNAGG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 2 cut(s) 397, 954
EcoRII CCWGG 3 cut(s) 219, 399, 949
EcoRV GATATC 1 cut(s) 876
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 5 cut(s) 33, 263, 389, 643, 1037
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 2 cut(s) 735, 940
FatI CATG 5 cut(s) 29, 259, 385, 639, 1033
FokI GGATG 3 cut(s) 116, 574, 584
FriOI GRGCYC 1 cut(s) 534
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 378, 466
HapII CCGG 2 cut(s) 129, 719
HhaI GCGC 1 cut(s) 304
Hin1II CATG 5 cut(s) 33, 263, 389, 643, 1037
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 3 cut(s) 296, 723, 944
HpaII CCGG 2 cut(s) 129, 719
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 4 cut(s) 433, 509, 668, 695
Hpy188I TCNGA 6 cut(s) 154, 249, 412, 646, 676, 996
Hpy188III TCNNGA 4 cut(s) 53, 535, 593, 805
Hpy8I GTNNAC 4 cut(s) 433, 509, 668, 695
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 5 cut(s) 277, 286, 562, 968, 1016
HpyCH4V TGCA 3 cut(s) 119, 575, 703
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 211, 451, 1055
HpyF3I CTNAG 5 cut(s) 13, 141, 512, 536, 662
Hsp92II CATG 5 cut(s) 33, 263, 389, 643, 1037
HspAI GCGC 1 cut(s) 302
KflI GGGWCCC 1 cut(s) 954
KpnI GGTACC 1 cut(s) 755
Kzo9I GATC 3 cut(s) 5, 391, 756
LmnI GCTCC 3 cut(s) 202, 529, 537
LweI GCATC 2 cut(s) 115, 562
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 5 cut(s) 68, 585, 850, 976, 1036
MalI GATC 3 cut(s) 7, 393, 758
MboI GATC 3 cut(s) 5, 391, 756
MboII GAAGA 8 cut(s) 76, 304, 341, 346, 719, 722, 752, 1021
MhlI GDGCHC 2 cut(s) 140, 534
MlsI TGGCCA 2 cut(s) 378, 466
MluCI AATT 3 cut(s) 342, 519, 1060
MluNI TGGCCA 2 cut(s) 378, 466
MlyI GAGTC 2 cut(s) 717, 953
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 9 cut(s) 160, 193, 223, 478, 520, 531, 590, 639, 864
Mox20I TGGCCA 2 cut(s) 378, 466
MroXI GAANNNNTTC 1 cut(s) 311
MscI TGGCCA 2 cut(s) 378, 466
MseI TTAA 3 cut(s) 551, 927, 1063
MslI CAYNNNNRTG 2 cut(s) 384, 906
Msp20I TGGCCA 2 cut(s) 378, 466
MspI CCGG 2 cut(s) 129, 719
MspR9I CCNGG 4 cut(s) 221, 401, 720, 951
MvaI CCWGG 3 cut(s) 221, 401, 951
MwoI GCNNNNNNNGC 4 cut(s) 125, 211, 451, 1055
NciI CCSGG 1 cut(s) 720
NdeII GATC 3 cut(s) 5, 391, 756
NlaIII CATG 5 cut(s) 33, 263, 389, 643, 1037
NlaIV GGNNCC 5 cut(s) 84, 685, 753, 955, 956
NmuCI GTSAC 3 cut(s) 68, 976, 1036
NspI RCATGY 1 cut(s) 1037
NspV TTCGAA 1 cut(s) 315
PciI ACATGT 1 cut(s) 1033
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 399
PleI GAGTC 2 cut(s) 717, 952
PpsI GAGTC 2 cut(s) 717, 952
PpuMI RGGWCCY 2 cut(s) 397, 954
PscI ACATGT 1 cut(s) 1033
PshAI GACNNNNGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 534
Psp5II RGGWCCY 2 cut(s) 397, 954
Psp6I CCWGG 3 cut(s) 219, 399, 949
PspGI CCWGG 3 cut(s) 219, 399, 949
PspN4I GGNNCC 5 cut(s) 84, 685, 753, 955, 956
PspPI GGNCC 3 cut(s) 217, 397, 954
PspPPI RGGWCCY 2 cut(s) 397, 954
PstNI CAGNNNCTG 1 cut(s) 400
RsaI GTAC 8 cut(s) 603, 623, 696, 717, 753, 827, 939, 968
RsaNI GTAC 8 cut(s) 602, 622, 695, 716, 752, 826, 938, 967
RseI CAYNNNNRTG 2 cut(s) 384, 906
SacI GAGCTC 1 cut(s) 534
SaqAI TTAA 3 cut(s) 551, 927, 1063
Sau3AI GATC 3 cut(s) 5, 391, 756
Sau96I GGNCC 3 cut(s) 217, 397, 954
SchI GAGTC 2 cut(s) 717, 953
ScrFI CCNGG 4 cut(s) 221, 401, 720, 951
SduI GDGCHC 2 cut(s) 140, 534
SfaNI GCATC 2 cut(s) 115, 562
SfuI TTCGAA 1 cut(s) 315
SinI GGWCC 3 cut(s) 217, 397, 954
SmiMI CAYNNNNRTG 2 cut(s) 384, 906
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
Sse9I AATT 3 cut(s) 342, 519, 1060
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 4 cut(s) 219, 399, 718, 949
StyI CCWWGG 1 cut(s) 687
TaqI TCGA 4 cut(s) 168, 315, 456, 804
TasI AATT 3 cut(s) 342, 519, 1060
TatI WGTACW 3 cut(s) 694, 825, 966
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 3 cut(s) 551, 927, 1063
Tru9I TTAA 3 cut(s) 551, 927, 1063
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 3 cut(s) 68, 976, 1036
Tsp45I GTSAC 3 cut(s) 68, 976, 1036
TspDTI ATGAA 3 cut(s) 120, 628, 1028
TspGWI ACGGA 1 cut(s) 999
TspRI CASTG 1 cut(s) 1045
VpaK11BI GGWCC 3 cut(s) 217, 397, 954
XceI RCATGY 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.