Rroxscaffold_6G00414720

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000451
Physical Location & Seq
Reverse (-)
36984916 .. 36986360
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414720.1

Sequence Viewer

Length: 453 bp
ATGGGTTCAAGCACAGATGTAGCGCTTTCTGGCACATCTCTACCAGCACCAAATGTTCAAGAAACGGTGAGGAATGGCCCTTTGCATGTCCCTCAAAGATACTTCAGAAATGAAGTTGACGTGCCAAAGGATGGTGATACTTGTCATGATCGTTCTTCTGAGATGGTAAATCCTGGAGTGGCAAGAGAAGTGATGGAAAGGGTGACGGATTCTGCGGCAAAGTTCTTCGAACTTCCCTTGGAAGAGAAGAACAATATTTCTATGCCATTAGATGAAATGCAAGGCTATGGCCACGCCTCTGTGGTTTCTGAAGACCAAATACTGGAATGGTCTGACAGACTTACACTTGCCGTTCACCCATCCAAGTACAGAAATCCCAAGGCTATTGAGACATACTCTAGTGAAGTTAGACGAGTTGGAGAGGAGTTAGACGAGTTGGAGAGGAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

4.76

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 56 - 122 8.2e-13 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 131, 322
AciI CCGC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 2 cut(s) 88, 330
AfaI GTAC 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 131, 322
AgsI TTSAA 2 cut(s) 9, 59
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 447
AluI AGCT 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 383
Aor51HI AGCGCT 1 cut(s) 24
AoxI GGCC 2 cut(s) 76, 289
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 4 cut(s) 79, 146, 214, 347
AsuII TTCGAA 1 cut(s) 228
BalI TGGCCA 1 cut(s) 291
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 4 cut(s) 125, 157, 187, 367
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 237, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 322
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 237, 378
BseGI GGATG 2 cut(s) 136, 359
BseLI CCNNNNNNNGG 2 cut(s) 131, 322
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 437
BshFI GGCC 2 cut(s) 78, 291
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 131, 322
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 78, 291
Bsp119I TTCGAA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 78, 291
BspCNI CTCAG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 145
BspT104I TTCGAA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 237, 378
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 237, 378
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 136, 359
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 78, 291
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 136, 359
CciI TCATGA 1 cut(s) 145
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 86, 146
CviJI RGCY 5 cut(s) 78, 285, 291, 383, 447
CviKI_1 RGCY 5 cut(s) 78, 285, 291, 383, 447
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 237, 378
Eco47III AGCGCT 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 88, 330
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 237, 378
ErhI CCWWGG 2 cut(s) 237, 378
FaeI CATG 2 cut(s) 89, 149
FaiI YATR 5 cut(s) 87, 147, 263, 288, 394
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 85, 145
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 143, 346
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 78, 291
HhaI GCGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 89, 149
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 209
HphI GGTGA 4 cut(s) 79, 146, 214, 347
Hpy166II GTNNAC 2 cut(s) 118, 355
Hpy188I TCNGA 5 cut(s) 107, 160, 310, 334, 452
Hpy188III TCNNGA 2 cut(s) 59, 146
Hpy8I GTNNAC 2 cut(s) 118, 355
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 85, 280
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 89, 149
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 5 cut(s) 15, 57, 159, 186, 308
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 5 cut(s) 147, 217, 254, 259, 323
MlsI TGGCCA 1 cut(s) 291
MluNI TGGCCA 1 cut(s) 291
MmeI TCCRAC 2 cut(s) 397, 417
MnlI CCTC 5 cut(s) 63, 102, 307, 415, 435
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 89, 149
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 228
PagI TCATGA 1 cut(s) 145
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 2 cut(s) 131, 322
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 174
SetI ASST 2 cut(s) 123, 449
SfuI TTCGAA 1 cut(s) 228
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 2 cut(s) 237, 378
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 228
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 209
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 126, 288
TspGWI ACGGA 1 cut(s) 221
Van91I CCANNNNNTGG 2 cut(s) 131, 322
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.