Rmu_sc0012177.1_g000007

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012177.1
OG0000451
Physical Location & Seq
Reverse (-)
25654 .. 26927
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012177.1_g000007.1.cds

Sequence Viewer

Length: 873 bp
atgagtttaaacacagatgtggcgtttgtgcaggaggataaggattctgggagtttttcccagaaaccacatagatcatctcttcggccggtaccaaatgttcaagaactggtaaggaatgatcctttacaggttcccaaaagatatattaggaacgaagaagacatgccgaaggaagcggatctttgtcatcatctttcttctgagattcctatcattgatgtttctttgctctccaaaggggacaacgaggagcttcgcaaactcgacctggcttgcaaagaatggggattctttgtgatgataaatcatggagtggaaacagaagtaatgcagggcatgaaggatgctgcggacaagttctttgaacttccaatagaagagaagaattttattgctgtgccatcagctcagagacaaggctatggttttaaccaagcaatttctgaggagaagattttggattggtctgacagaattcttctcgggctttacccatatcgacatagaaagcctgaggtttggccaccgacaccactcaaggaagctattgagatatatggtagtgaagttagacatgttgcagaggagctcctgagatctctatctttgattatggggatggagaaggatgttcttcttgaactacatcaagagctggcacaatttctgtctgtggcgtattatccttcatgctctatgcctgacaaagtactaggtctaacccctcactccgacaaagctagcataaccatacttatgcaagacgacggtcttaccggactacaacttaaacatgaaggaaaatgggtaccggtgaagccaattccaaactctttggttgtgaatgttggagatgcgattgaggtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

290

Amino Acids

32.87

Weight (kDa)

5.06

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 91, 811
AccB1I GGYRCC 2 cut(s) 91, 811
AciI CCGC 2 cut(s) 179, 353
AclWI GGATC 2 cut(s) 116, 189
AcoI YGGCCR 2 cut(s) 86, 524
AcsI RAATTY 2 cut(s) 388, 477
AfaI GTAC 3 cut(s) 93, 714, 813
AflIII ACRYGT 1 cut(s) 577
AgeI ACCGGT 1 cut(s) 814
AgsI TTSAA 3 cut(s) 104, 368, 644
AjnI CCWGG 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 6 cut(s) 256, 410, 548, 592, 658, 743
AluI AGCT 6 cut(s) 256, 410, 548, 592, 658, 743
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 116, 189
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 2 cut(s) 86, 524
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 388, 477
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AsiGI ACCGGT 1 cut(s) 814
Asp718I GGTACC 2 cut(s) 91, 811
AsuHPI GGTGA 1 cut(s) 829
AsuNHI GCTAGC 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 516
BalI TGGCCA 1 cut(s) 526
BanI GGYRCC 2 cut(s) 91, 811
BanII GRGCYC 1 cut(s) 594
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 412, 616
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 2 cut(s) 716, 744
BglII AGATCT 1 cut(s) 599
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 485
BmiI GGNNCC 3 cut(s) 93, 135, 813
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 2 cut(s) 337, 847
BmtI GCTAGC 1 cut(s) 747
BoxI GACNNNNGTC 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 524
BsaBI GATNNNNATC 2 cut(s) 212, 604
BsaWI WCCGGW 2 cut(s) 779, 814
Bse118I RCCGGY 2 cut(s) 88, 814
Bse1I ACTGG 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 516
Bse8I GATNNNNATC 2 cut(s) 212, 604
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 352, 627, 637
BseJI GATNNNNATC 2 cut(s) 212, 604
BseMII CTCAG 5 cut(s) 195, 425, 438, 507, 587
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 3 cut(s) 266, 464, 602
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 88, 526
BshNI GGYRCC 2 cut(s) 91, 811
BshTI ACCGGT 1 cut(s) 814
BsiEI CGRYCG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 3 cut(s) 89, 780, 815
BslFI GGGAC 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 2 cut(s) 88, 526
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 4 cut(s) 74, 121, 181, 599
BspACI CCGC 2 cut(s) 179, 353
BspANI GGCC 2 cut(s) 88, 526
BspCNI CTCAG 5 cut(s) 196, 424, 439, 508, 588
BspLI GGNNCC 3 cut(s) 93, 135, 813
BspOI GCTAGC 1 cut(s) 747
BspPI GGATC 2 cut(s) 116, 189
BspT107I GGYRCC 2 cut(s) 91, 811
BsrFI RCCGGY 2 cut(s) 88, 814
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 2 cut(s) 88, 814
BssMI GATC 4 cut(s) 74, 121, 181, 599
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 773
Bst6I CTCTTC 2 cut(s) 87, 375
BstC8I GCNNGC 3 cut(s) 277, 660, 745
BstDEI CTNAG 5 cut(s) 204, 411, 447, 516, 596
BstF5I GGATG 3 cut(s) 352, 627, 637
BstKTI GATC 4 cut(s) 77, 124, 184, 602
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 4 cut(s) 74, 121, 181, 599
BstMCI CGRYCG 1 cut(s) 89
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 2 cut(s) 169, 581
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 181, 599
BstYI RGATCY 2 cut(s) 181, 599
BstZI CGGCCG 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 516
BsuRI GGCC 2 cut(s) 88, 526
BtsCI GGATG 3 cut(s) 352, 627, 637
Cac8I GCNNGC 3 cut(s) 277, 660, 745
Cfr10I RCCGGY 2 cut(s) 88, 814
Csp6I GTAC 3 cut(s) 92, 713, 812
CspAI ACCGGT 1 cut(s) 814
CviAII CATG 6 cut(s) 166, 311, 340, 578, 693, 797
CviQI GTAC 3 cut(s) 92, 713, 812
DdeI CTNAG 5 cut(s) 204, 411, 447, 516, 596
DpnI GATC 4 cut(s) 76, 123, 183, 601
DpnII GATC 4 cut(s) 74, 121, 181, 599
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 2 cut(s) 86, 524
EagI CGGCCG 1 cut(s) 86
Eam1104I CTCTTC 2 cut(s) 87, 375
EarI CTCTTC 2 cut(s) 87, 375
Ecl136II GAGCTC 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 594
Eco52I CGGCCG 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 592
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 592
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 594
FaeI CATG 6 cut(s) 169, 314, 343, 581, 696, 800
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 257
FatI CATG 6 cut(s) 165, 310, 339, 577, 692, 796
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 3 cut(s) 359, 634, 644
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 2 cut(s) 716, 744
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 2 cut(s) 88, 526
HapII CCGG 3 cut(s) 89, 780, 815
Hin1II CATG 6 cut(s) 169, 314, 343, 581, 696, 800
HinfI GANTC 3 cut(s) 44, 208, 291
HpaII CCGG 3 cut(s) 89, 780, 815
HphI GGTGA 1 cut(s) 829
Hpy188I TCNGA 5 cut(s) 205, 414, 448, 472, 736
Hpy188III TCNNGA 4 cut(s) 104, 595, 641, 653
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 5 cut(s) 166, 337, 622, 699, 794
HpyCH4III ACNGT 1 cut(s) 773
HpyCH4V TGCA 5 cut(s) 31, 279, 334, 584, 763
HpyF3I CTNAG 5 cut(s) 204, 411, 447, 516, 596
Hsp92II CATG 6 cut(s) 169, 314, 343, 581, 696, 800
KpnI GGTACC 2 cut(s) 95, 815
Kzo9I GATC 4 cut(s) 74, 121, 181, 599
LmnI GCTCC 3 cut(s) 253, 589, 597
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 337, 847
MaeI CTAG 2 cut(s) 716, 744
MalI GATC 4 cut(s) 76, 123, 183, 601
MboI GATC 4 cut(s) 74, 121, 181, 599
MboII GAAGA 9 cut(s) 74, 170, 173, 192, 392, 397, 466, 473, 629
MflI RGATCY 2 cut(s) 181, 599
MhlI GDGCHC 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 5 cut(s) 388, 441, 477, 665, 825
MluNI TGGCCA 1 cut(s) 526
MmeI TCCRAC 2 cut(s) 759, 832
MnlI CCTC 7 cut(s) 28, 244, 442, 511, 580, 738, 859
Mox20I TGGCCA 1 cut(s) 526
MscI TGGCCA 1 cut(s) 526
MseI TTAA 3 cut(s) 8, 432, 792
MslI CAYNNNNRTG 2 cut(s) 17, 758
Msp20I TGGCCA 1 cut(s) 526
MspI CCGG 3 cut(s) 89, 780, 815
MspR9I CCNGG 1 cut(s) 272
MssI GTTTAAAC 1 cut(s) 9
MvaI CCWGG 1 cut(s) 272
NdeII GATC 4 cut(s) 74, 121, 181, 599
NheI GCTAGC 1 cut(s) 743
NlaIII CATG 6 cut(s) 169, 314, 343, 581, 696, 800
NlaIV GGNNCC 3 cut(s) 93, 135, 813
NspI RCATGY 2 cut(s) 169, 581
OliI CACNNNNGTG 1 cut(s) 17
PciI ACATGT 1 cut(s) 577
PfeI GAWTC 3 cut(s) 44, 208, 291
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 1 cut(s) 352
PmeI GTTTAAAC 1 cut(s) 9
PscI ACATGT 1 cut(s) 577
PshAI GACNNNNGTC 1 cut(s) 771
Psp124BI GAGCTC 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 93, 135, 813
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
PsuI RGATCY 2 cut(s) 181, 599
RsaI GTAC 3 cut(s) 93, 714, 813
RsaNI GTAC 3 cut(s) 92, 713, 812
RseI CAYNNNNRTG 2 cut(s) 17, 758
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 3 cut(s) 8, 432, 792
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 4 cut(s) 74, 121, 181, 599
ScaI AGTACT 1 cut(s) 714
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 594
SfaNI GCATC 2 cut(s) 337, 847
SmiMI CAYNNNNRTG 2 cut(s) 17, 758
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 388, 441, 477, 665, 825
SsiI CCGC 2 cut(s) 179, 353
SspMI CTAG 2 cut(s) 716, 744
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 773
TaqI TCGA 2 cut(s) 267, 502
TasI AATT 5 cut(s) 388, 441, 477, 665, 825
TatI WGTACW 1 cut(s) 712
TfiI GAWTC 3 cut(s) 44, 208, 291
Tru1I TTAA 3 cut(s) 8, 432, 792
Tru9I TTAA 3 cut(s) 8, 432, 792
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 356, 681, 813
XapI RAATTY 2 cut(s) 388, 477
XceI RCATGY 2 cut(s) 169, 581
XspI CTAG 2 cut(s) 716, 744
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.