Rh3DG147900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000451
Physical Location & Seq
Forward (+)
12679136 .. 12679774
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG147900.1

Sequence Viewer

Length: 513 bp
ATGTCTCTATCGATACTCATGGGAATGGAGAAGGATTCTCTTATTGGCCTCCATAACCAGTTATTACAAGGTGTGAGGGTGAACTACTATCCTCCATGCTCCATGCCTCATAAAGTACTAGGACTGAGTCCACACTCGGACACGAGCACTATAACCATACTTATGCAAGAGGACGATGTCACCGGTTTGCAGATTCAGAAAGGAGGAGAATGGGTGTCAGTCGAGCCAATTCCAAACGCTCTTGTTGTGAATGTTGGAGATGTTCTTGAGATATGGACTAATGGGAAGTACAAGAGCATTGAGCACAGAGCTGTGACGACCAAAAACAAGGCGAGGTTATCCTATGCAACATTTCTTTTCCCACATGACGATGTGGAAGTTGAACCAATTTATGATATTGTGGAGTCACAGACGATGTACAAGAAAGTCAGATATGGAGATTATCTCAGACAGTCCATGAAGATGAAGCATGCGGGGAAGGCACACACTCAAATGGCGAAGATCGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

170

Amino Acids

19.16

Weight (kDa)

6.65

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 25 - 121 4.4e-35 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 473
AfaI GTAC 3 cut(s) 117, 290, 419
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 1 cut(s) 383
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw21I GWGCWC 2 cut(s) 149, 306
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 91, 172
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 149, 306
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpuEI CTTGAG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 11
BseMII CTCAG 2 cut(s) 116, 460
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 149, 306
BsiSI CCGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 149, 306
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 1 cut(s) 501
BspACI CCGC 1 cut(s) 473
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 117, 459
BspDI ATCGAT 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 182
BssMI GATC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 453
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 125, 446
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 501
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNSI RCATGY 1 cut(s) 473
Bsu15I ATCGAT 1 cut(s) 11
BsuRI GGCC 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 3 cut(s) 116, 289, 418
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 6 cut(s) 19, 96, 103, 365, 457, 470
CviJI RGCY 4 cut(s) 48, 226, 311, 510
CviKI_1 RGCY 4 cut(s) 48, 226, 311, 510
CviQI GTAC 3 cut(s) 116, 289, 418
DdeI CTNAG 2 cut(s) 125, 446
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
FaeI CATG 6 cut(s) 22, 99, 106, 368, 460, 473
FatI CATG 6 cut(s) 18, 95, 102, 364, 456, 469
FauI CCCGC 1 cut(s) 466
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 183
Hin1II CATG 6 cut(s) 22, 99, 106, 368, 460, 473
HinfI GANTC 4 cut(s) 35, 127, 193, 404
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 91, 172
Hpy166II GTNNAC 2 cut(s) 82, 131
Hpy188I TCNGA 4 cut(s) 139, 198, 431, 449
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 82, 131
HpyAV CCTTC 3 cut(s) 25, 472, 500
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4V TGCA 3 cut(s) 166, 190, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 2 cut(s) 125, 446
Hsp92II CATG 6 cut(s) 22, 99, 106, 368, 460, 473
Kzo9I GATC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 71, 196
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 3 cut(s) 178, 313, 405
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MboII GAAGA 2 cut(s) 472, 511
MhlI GDGCHC 2 cut(s) 149, 306
MluCI AATT 2 cut(s) 228, 387
MlyI GAGTC 2 cut(s) 136, 413
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 7 cut(s) 59, 69, 102, 117, 163, 197, 327
MslI CAYNNNNRTG 5 cut(s) 23, 161, 369, 461, 491
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeII GATC 1 cut(s) 501
NlaIII CATG 6 cut(s) 22, 99, 106, 368, 460, 473
NmuCI GTSAC 3 cut(s) 178, 313, 405
NspI RCATGY 1 cut(s) 473
PaeI GCATGC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 35, 193
PflFI GACNNNGTC 2 cut(s) 126, 176
PinAI ACCGGT 1 cut(s) 182
PleI GAGTC 2 cut(s) 135, 412
PpsI GAGTC 2 cut(s) 135, 412
PsyI GACNNNGTC 2 cut(s) 126, 176
RsaI GTAC 3 cut(s) 117, 290, 419
RsaNI GTAC 3 cut(s) 116, 289, 418
RseI CAYNNNNRTG 5 cut(s) 23, 161, 369, 461, 491
Sau3AI GATC 1 cut(s) 501
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 2 cut(s) 136, 413
SduI GDGCHC 2 cut(s) 149, 306
SetI ASST 3 cut(s) 73, 313, 338
SmiMI CAYNNNNRTG 5 cut(s) 23, 161, 369, 461, 491
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SphI GCATGC 1 cut(s) 473
Sse9I AATT 2 cut(s) 228, 387
SsiI CCGC 1 cut(s) 473
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 11, 222, 504
TasI AATT 2 cut(s) 228, 387
TatI WGTACW 3 cut(s) 115, 288, 417
TfiI GAWTC 2 cut(s) 35, 193
TseFI GTSAC 3 cut(s) 178, 313, 405
Tsp45I GTSAC 3 cut(s) 178, 313, 405
TspDTI ATGAA 2 cut(s) 473, 479
Tth111I GACNNNGTC 2 cut(s) 126, 176
XceI RCATGY 1 cut(s) 473
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.