Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8178858.1

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

115 .. 683

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8178858.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgggatcaaactcagctctgtatgacccatgtccgccactaccaaatgttcaagaaatggtgaagagtgacccttttcaggtgcctgaaagatacatcagggatgaaaaggacattgcaaacgatgccggtttgtgctctcagctttcctccgaagttcccatcgtcgatttttctctgctctcaaatgggaacaaagaggagcttcacaagctggaccaggcttgcgaggaatggggtttctttcagatggtaaatcatggagtggcaacagaaataacgaagggcttgaaggattcagcgctgaagttcttcgaacttccattagaagagaagaacaaaattgctatgccaccaaatgacatacaaggctatggccattcccatgtggatcaggtcctggattggtctgacaaacttgttcttgttgtttacccacaacagcatagaaagctcgatgtttggccaccaaatccattcaagtatgtccctaaactttac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

167

Amino Acids

19.03

Weight (kDa)

4.94

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	13, 399
AcoI	YGGCCR	2 cut(s)	376, 464
AcuI	CTGAAG	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	53, 292, 481
AjnI	CCWGG	2 cut(s)	219, 399
AluBI	AGCT	5 cut(s)	17, 145, 205, 214, 454
AluI	AGCT	5 cut(s)	17, 145, 205, 214, 454
Alw21I	GWGCWC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	13, 399
AlwNI	CAGNNNCTG	1 cut(s)	400
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	2 cut(s)	376, 464
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	217, 397
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	217, 397
BalI	TGGCCA	2 cut(s)	378, 466
BanI	GGYRCC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	140
BccI	CCATC	2 cut(s)	170, 244
BciT130I	CCWGG	2 cut(s)	221, 401
BfoI	RGCGCY	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	221, 401
Bme18I	GGWCC	2 cut(s)	217, 397
BmgT120I	GGNCC	2 cut(s)	217, 397
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	221, 401
BmsI	GCATC	1 cut(s)	115
BoxI	GACNNNNGTC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	221, 401
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	27, 155
BseRI	GAGGAG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	378, 466
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	378, 466
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	5, 391
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	378, 466
BspCNI	CTCAG	2 cut(s)	26, 154
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	13, 399
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	2 cut(s)	5, 391
Bst2UI	CCWGG	2 cut(s)	221, 401
Bst6I	CTCTTC	2 cut(s)	59, 324
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	13, 141
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	8, 394
BstMBI	GATC	2 cut(s)	5, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 211, 451
BstNI	CCWGG	2 cut(s)	221, 401
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	219, 399
BsuRI	GGCC	2 cut(s)	378, 466
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	217, 397
CviAII	CATG	3 cut(s)	30, 260, 386
DdeI	CTNAG	2 cut(s)	13, 141
DpnI	GATC	2 cut(s)	7, 393
DpnII	GATC	2 cut(s)	5, 391
EaeI	YGGCCR	2 cut(s)	376, 464
Eam1104I	CTCTTC	2 cut(s)	59, 324
EarI	CTCTTC	2 cut(s)	59, 324
EciI	GGCGGA	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	217, 397
Eco47III	AGCGCT	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	219, 399
FaeI	CATG	3 cut(s)	33, 263, 389
FaiI	YATR	9 cut(s)	24, 31, 261, 350, 365, 375, 387, 447, 486
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	29, 259, 385
FokI	GGATG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	378, 466
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	33, 263, 389
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	154, 249, 412
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	277, 286
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 211, 451
HpyF3I	CTNAG	2 cut(s)	13, 141
Hsp92II	CATG	3 cut(s)	33, 263, 389
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	5, 391
LmnI	GCTCC	1 cut(s)	202
LweI	GCATC	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	7, 393
MboI	GATC	2 cut(s)	5, 391
MboII	GAAGA	4 cut(s)	76, 304, 341, 346
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	2 cut(s)	378, 466
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	2 cut(s)	378, 466
MnlI	CCTC	3 cut(s)	160, 193, 223
Mox20I	TGGCCA	2 cut(s)	378, 466
MroXI	GAANNNNTTC	1 cut(s)	311
MscI	TGGCCA	2 cut(s)	378, 466
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	2 cut(s)	378, 466
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	221, 401
MvaI	CCWGG	2 cut(s)	221, 401
MwoI	GCNNNNNNNGC	3 cut(s)	125, 211, 451
NdeII	GATC	2 cut(s)	5, 391
NlaIII	CATG	3 cut(s)	33, 263, 389
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	399
PpuMI	RGGWCCY	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	219, 399
PspGI	CCWGG	2 cut(s)	219, 399
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	217, 397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	5, 391
Sau96I	GGNCC	2 cut(s)	217, 397
ScrFI	CCNGG	2 cut(s)	221, 401
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	7 cut(s)	19, 84, 147, 207, 216, 399, 456
SfaNI	GCATC	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	2 cut(s)	217, 397
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	219, 399
TaqI	TCGA	3 cut(s)	168, 315, 456
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	120
VpaK11BI	GGWCC	2 cut(s)	217, 397
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.