Rroxscaffold_6G00414780

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000451
Physical Location & Seq
Reverse (-)
37044661 .. 37046640
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414780.1

Sequence Viewer

Length: 996 bp
ATGAGTAGTCTTGATATGGCATCTCTGCCAGTGGAACCAAATGTTCAAGAACTGGTTAGGAGTAATCCATTAAAGATCCCCGAGAAGTACCTTTTAAGGAATATAGATCAACAAGACAAGCCAAAGAGTATAGCAAACACTAGTCAGGATTTTTCTTCTGATGATATCCCCATCATCGATTTTTCTCTGCTCTCAAGTGGGCACGAGGAGGAGCTTAACAAACTGGATCTGGCTTGCAAGGAATGGGGATTCTTCCAGCTCGTTAATCATGGAGTGGCAAGAGAAGTGTTGCATGACATGAAGGATGGTTCTGCAAAGTTCTTTGAACTTCCTTTAGAAGAGAAGAATAAAATTTCCATGTCCACAGCAAAAGGCACACGAGAAGGCTATGGACAAGCCTTTGTGGCTACTGAAGAGCAGACACTCGACTGGTCCGACGCACTGGTTCTCAATCTTTACCCATCCCAGATAAGGAACCTTGAGGAGGCTATTGAGGCATATGCTAGTGAAGTTAAAAGAGTTGGAGAGGAGATCCTTAGATCTCTGTCTTTAACTATGGGGATGGAGAAGGATGTTCTTCTTGGACTGCATCAAGATTTGGCAGCAGCATTGCGCATAAACTACATTCCTCCATGCTCTATGCCTGATAAAGTACTAGGTCTAAGTGCACATGCGGATGCAGGCACCATTACTGTACTTATGCAAGAAGATAATGTTATCAGATTCGAAAACAAGGACAATGGATATGGAGCAACGGGAAGTACAAAAGCATTGAACACAGCTGTGACAAACGAAAGCAAGGCAAGGATGTCTTATGCATCATTCATCTTTCCACATGTCGATGTGGAAATTGAGCCGTTCGATCATATACTGGAGTCATCAGGGACCATTCAGATGTATAAGAAGGTCAAATATGGAGATTATTTGATTCAATGCTTGAAGAGGAAAATGGAGGGGAAGGAACACACTCAAAATGCAAAATTAGGAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

331

Amino Acids

36.95

Weight (kDa)

5.04

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 56 - 154 1.3e-28 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 203 - 242 2.7e-07 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 683
AciI CCGC 1 cut(s) 674
AclWI GGATC 3 cut(s) 70, 234, 526
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 5 cut(s) 89, 654, 696, 763, 991
AfiI CCNNNNNNNGG 2 cut(s) 471, 484
AflIII ACRYGT 1 cut(s) 835
AgsI TTSAA 5 cut(s) 47, 326, 775, 932, 940
AhlI ACTAGT 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 782
AluBI AGCT 3 cut(s) 214, 259, 782
AluI AGCT 3 cut(s) 214, 259, 782
Alw21I GWGCWC 1 cut(s) 670
Alw44I GTGCAC 1 cut(s) 666
AlwI GGATC 3 cut(s) 70, 234, 526
Ama87I CYCGRG 1 cut(s) 80
ApaLI GTGCAC 1 cut(s) 666
ApeKI GCWGC 2 cut(s) 602, 605
ApoI RAATTY 1 cut(s) 351
AspLEI GCGC 1 cut(s) 615
AspS9I GGNCC 2 cut(s) 432, 885
AsuII TTCGAA 1 cut(s) 726
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 432, 885
BaeGI GKGCMC 2 cut(s) 204, 670
BanI GGYRCC 1 cut(s) 683
BauI CACGAG 2 cut(s) 203, 378
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 614, 617
BccI CCATC 4 cut(s) 179, 299, 469, 556
BceAI ACGGC 1 cut(s) 841
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 3 cut(s) 141, 504, 656
BglI GCCNNNNNGGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 539
BisI GCNGC 2 cut(s) 603, 606
BlsI GCNGC 2 cut(s) 604, 607
BmcAI AGTACT 2 cut(s) 654, 991
Bme18I GGWCC 2 cut(s) 432, 885
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 432, 885
BmiI GGNNCC 4 cut(s) 36, 476, 685, 886
BmsI GCATC 4 cut(s) 29, 598, 667, 827
BpmI CTGGAG 1 cut(s) 893
Bpu14I TTCGAA 1 cut(s) 726
BpuEI CTTGAG 2 cut(s) 178, 500
Bsa29I ATCGAT 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 484
Bse1I ACTGG 6 cut(s) 29, 57, 228, 434, 447, 876
Bse3DI GCAATG 1 cut(s) 608
BseCI ATCGAT 1 cut(s) 177
BseGI GGATG 6 cut(s) 310, 461, 567, 577, 682, 813
BseLI CCNNNNNNNGG 2 cut(s) 471, 484
BseMI GCAATG 1 cut(s) 608
BseNI ACTGG 6 cut(s) 29, 57, 228, 434, 447, 876
BseRI GAGGAG 4 cut(s) 221, 224, 497, 542
BseSI GKGCMC 2 cut(s) 204, 670
BseXI GCAGC 2 cut(s) 614, 617
BshNI GGYRCC 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 670
BsiHKCI CYCGRG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 898
BslI CCNNNNNNNGG 2 cut(s) 471, 484
BsmFI GGGAC 1 cut(s) 898
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 726
Bsp1286I GDGCHC 2 cut(s) 204, 670
Bsp143I GATC 6 cut(s) 75, 106, 226, 531, 539, 862
BspACI CCGC 1 cut(s) 674
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 4 cut(s) 36, 476, 685, 886
BspPI GGATC 3 cut(s) 70, 234, 526
BspQI GCTCTTC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 726
BspT107I GGYRCC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 608
BsrI ACTGG 6 cut(s) 29, 57, 228, 434, 447, 876
BssMI GATC 6 cut(s) 75, 106, 226, 531, 539, 862
BssSI CACGAG 2 cut(s) 203, 378
Bst2BI CACGAG 2 cut(s) 203, 378
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 3 cut(s) 333, 408, 935
BstBI TTCGAA 1 cut(s) 726
BstC8I GCNNGC 2 cut(s) 235, 682
BstDEI CTNAG 2 cut(s) 536, 662
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 6 cut(s) 310, 461, 567, 577, 682, 813
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 6 cut(s) 78, 109, 229, 534, 542, 865
BstMBI GATC 6 cut(s) 75, 106, 226, 531, 539, 862
BstMWI GCNNNNNNNGC 2 cut(s) 404, 494
BstNSI RCATGY 2 cut(s) 674, 839
BstSLI GKGCMC 2 cut(s) 204, 670
BstV1I GCAGC 2 cut(s) 614, 617
BstX2I RGATCY 4 cut(s) 75, 226, 531, 539
BstYI RGATCY 4 cut(s) 75, 226, 531, 539
Bsu15I ATCGAT 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 6 cut(s) 310, 461, 567, 577, 682, 813
BtsIMutI CAGTG 2 cut(s) 36, 440
Cac8I GCNNGC 2 cut(s) 235, 682
CfoI GCGC 1 cut(s) 615
Cfr13I GGNCC 2 cut(s) 432, 885
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 446
Csp6I GTAC 5 cut(s) 88, 653, 695, 762, 990
CviAII CATG 7 cut(s) 269, 293, 298, 358, 633, 671, 836
CviQI GTAC 5 cut(s) 88, 653, 695, 762, 990
DdeI CTNAG 2 cut(s) 536, 662
DpnI GATC 6 cut(s) 77, 108, 228, 533, 541, 864
DpnII GATC 6 cut(s) 75, 106, 226, 531, 539, 862
Eam1104I CTCTTC 3 cut(s) 333, 408, 935
EarI CTCTTC 3 cut(s) 333, 408, 935
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 432, 885
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRV GATATC 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 820
FaeI CATG 7 cut(s) 272, 296, 301, 361, 636, 674, 839
FalI AAGNNNNNCTT 2 cut(s) 796, 828
FaqI GGGAC 1 cut(s) 898
FatI CATG 7 cut(s) 268, 292, 297, 357, 632, 670, 835
FauNDI CATATG 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 603, 606
FokI GGATG 6 cut(s) 317, 448, 574, 584, 689, 820
Fsp4HI GCNGC 2 cut(s) 603, 606
FspBI CTAG 3 cut(s) 141, 504, 656
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 1 cut(s) 614
GluI GCNGC 2 cut(s) 603, 606
GsuI CTGGAG 1 cut(s) 893
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 615
Hin1II CATG 7 cut(s) 272, 296, 301, 361, 636, 674, 839
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HinfI GANTC 4 cut(s) 249, 723, 875, 928
Hpy166II GTNNAC 2 cut(s) 363, 668
Hpy188I TCNGA 4 cut(s) 160, 436, 722, 894
Hpy188III TCNNGA 4 cut(s) 11, 47, 146, 593
Hpy8I GTNNAC 2 cut(s) 363, 668
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 5 cut(s) 295, 377, 562, 898, 952
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4V TGCA 9 cut(s) 237, 292, 314, 589, 668, 680, 703, 818, 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 494
HpyF3I CTNAG 2 cut(s) 536, 662
Hsp92II CATG 7 cut(s) 272, 296, 301, 361, 636, 674, 839
HspAI GCGC 1 cut(s) 613
Kzo9I GATC 6 cut(s) 75, 106, 226, 531, 539, 862
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 211, 749
Lsp1109I GCAGC 2 cut(s) 614, 617
LweI GCATC 4 cut(s) 29, 598, 667, 827
MaeI CTAG 3 cut(s) 141, 504, 656
MaeIII GTNAC 1 cut(s) 784
MalI GATC 6 cut(s) 77, 108, 228, 533, 541, 864
MboI GATC 6 cut(s) 75, 106, 226, 531, 539, 862
MboII GAAGA 8 cut(s) 147, 244, 350, 355, 425, 569, 719, 952
MflI RGATCY 4 cut(s) 75, 226, 531, 539
MhlI GDGCHC 2 cut(s) 204, 670
MluCI AATT 3 cut(s) 351, 849, 980
MlyI GAGTC 1 cut(s) 884
MmeI TCCRAC 2 cut(s) 459, 502
MnlI CCTC 9 cut(s) 199, 202, 475, 478, 487, 520, 639, 936, 946
Mph1103I ATGCAT 1 cut(s) 820
MseI TTAA 7 cut(s) 71, 95, 216, 264, 513, 551, 994
MslI CAYNNNNRTG 4 cut(s) 675, 782, 840, 893
MspA1I CMGCKG 1 cut(s) 782
MwoI GCNNNNNNNGC 2 cut(s) 404, 494
NdeI CATATG 1 cut(s) 499
NdeII GATC 6 cut(s) 75, 106, 226, 531, 539, 862
NlaIII CATG 7 cut(s) 272, 296, 301, 361, 636, 674, 839
NlaIV GGNNCC 4 cut(s) 36, 476, 685, 886
NmuCI GTSAC 1 cut(s) 784
NsbI TGCGCA 1 cut(s) 614
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 674, 839
NspV TTCGAA 1 cut(s) 726
OliI CACNNNNGTG 1 cut(s) 782
PciI ACATGT 1 cut(s) 835
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 3 cut(s) 249, 723, 928
PkrI GCNGC 2 cut(s) 604, 607
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
PscI ACATGT 1 cut(s) 835
PspN4I GGNNCC 4 cut(s) 36, 476, 685, 886
PspPI GGNCC 2 cut(s) 432, 885
PsuI RGATCY 4 cut(s) 75, 226, 531, 539
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 5 cut(s) 89, 654, 696, 763, 991
RsaNI GTAC 5 cut(s) 88, 653, 695, 762, 990
RseI CAYNNNNRTG 4 cut(s) 675, 782, 840, 893
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 7 cut(s) 71, 95, 216, 264, 513, 551, 994
SatI GCNGC 2 cut(s) 603, 606
Sau3AI GATC 6 cut(s) 75, 106, 226, 531, 539, 862
Sau96I GGNCC 2 cut(s) 432, 885
ScaI AGTACT 2 cut(s) 654, 991
SchI GAGTC 1 cut(s) 884
SduI GDGCHC 2 cut(s) 204, 670
SetI ASST 7 cut(s) 93, 216, 261, 480, 661, 784, 909
SfaNI GCATC 4 cut(s) 29, 598, 667, 827
SfuI TTCGAA 1 cut(s) 726
SinI GGWCC 2 cut(s) 432, 885
SmiMI CAYNNNNRTG 4 cut(s) 675, 782, 840, 893
SmlI CTYRAG 2 cut(s) 193, 479
SmoI CTYRAG 2 cut(s) 193, 479
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 351, 849, 980
SsiI CCGC 1 cut(s) 674
SspMI CTAG 3 cut(s) 141, 504, 656
TaaI ACNGT 1 cut(s) 694
TaqI TCGA 5 cut(s) 177, 426, 726, 840, 861
TasI AATT 3 cut(s) 351, 849, 980
TatI WGTACW 4 cut(s) 652, 694, 761, 989
TfiI GAWTC 3 cut(s) 249, 723, 928
Tru1I TTAA 7 cut(s) 71, 95, 216, 264, 513, 551, 994
Tru9I TTAA 7 cut(s) 71, 95, 216, 264, 513, 551, 994
TscAI CASTG 2 cut(s) 36, 447
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 2 cut(s) 602, 605
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 2 cut(s) 314, 814
TspRI CASTG 2 cut(s) 36, 447
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 2 cut(s) 432, 885
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 351
XceI RCATGY 2 cut(s) 674, 839
XspI CTAG 3 cut(s) 141, 504, 656
ZrmI AGTACT 2 cut(s) 654, 991
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.