Rw3G011930

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000451
Physical Location & Seq
Forward (+)
11774479 .. 11776505
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011930.1

Sequence Viewer

Length: 969 bp
ATGGAATCAAACTCAGCCCTTTATGCCCCATGTCCCTCACTACCAAATGTTCAAGAAATGGTGAGGACTGACCCTTTTCAGGTACCTGAAAAATACATCAGGAATGAAACAGACATTACAAAAGATGCAGGTTTGTGGCACAAAGAGGAGCTCACCAAGCTAGACCAGGCTTGCAAGGAATGGGGTTTCTTTCAGGTGGTAAATCACGGAGTGGCGACAGAAGTAACCAAGAGCTTGAAAGAAGCGGCGGAGAAGTTCTTTGAACTTCCATTAGAAGAGAAGAACAGAATTGCTATGCCATCAAATGACATACAAGGCTATGGCCATACCAATGTGGATCAGAAGGTGCTGGATTGGTCCGACAAACTTGTTCTTGTCGTTTACCCACACCAGTACAGAAAGCTCGAGGTTTGGCCGCCCACTCCATTCAAGGAGGCTATTGAGACATACTCTAGTGAAGTTAGAAGGGTTGGAGAGGAGCTTCTCAGGTCTCTATCGTTAATCATGGGGATGGAGAAGGATGCTGTTCTCGGACTACATCAAGAGTTGGTCCAACCTCTGTCTGTAGCCTACTATCCTCAGTGCTCAATGCCTGAGAAAGTACTTGGTCTAAGTGCACACTCAGACAAAGGGAGCTTAGCCATAGTTATGCAAGAAGATGATGTAATGGGACTACAAATCAAACACAACGGAAAATGGGTACCAATCAAGCCCATTCACGATGCCTTCACTGTGAATGTTGGAGATATTATTGAGATATGGAGTAATGGGAAGTACAAGAGCATTGAACACAGAGTTGTAACAAAACGAAAGCAGGAAATTGAACCCCTGGATCAAATGATTCTTGCGTCACCGGGGTCTTTTCCGTTGTACAAGAAAGTCACTTATGGGGATTATCTGAGGGAAACCAAGAAGATGAAATCTGAAGGGAAGGCACATGTCGTTGAAGTTGCCAAGATTGTAAGTTGA

Protein Analysis

322

Amino Acids

36.65

Weight (kDa)

5.97

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 47 - 140 1.5e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 187 - 272 1.5e-25 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
Acc65I GGTACC 2 cut(s) 82, 700
AccB1I GGYRCC 2 cut(s) 82, 700
AciI CCGC 3 cut(s) 245, 248, 416
AclWI GGATC 2 cut(s) 345, 840
AcoI YGGCCR 2 cut(s) 322, 413
AcuI CTGAAG 1 cut(s) 945
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 6 cut(s) 84, 395, 603, 702, 776, 872
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 937
AgsI TTSAA 7 cut(s) 53, 238, 263, 430, 788, 824, 947
AjnI CCWGG 2 cut(s) 165, 828
AluBI AGCT 6 cut(s) 151, 160, 234, 403, 481, 636
AluI AGCT 6 cut(s) 151, 160, 234, 403, 481, 636
Alw21I GWGCWC 3 cut(s) 153, 587, 619
Alw26I GTCTC 2 cut(s) 437, 495
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 2 cut(s) 345, 840
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 2 cut(s) 322, 413
ApaLI GTGCAC 1 cut(s) 615
Asp718I GGTACC 2 cut(s) 82, 700
AspS9I GGNCC 2 cut(s) 357, 550
AsuC2I CCSGG 1 cut(s) 855
AsuHPI GGTGA 3 cut(s) 73, 145, 843
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 2 cut(s) 357, 550
BaeGI GKGCMC 1 cut(s) 619
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 2 cut(s) 82, 700
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 3 cut(s) 153, 587, 619
BccI CCATC 2 cut(s) 307, 505
BciT130I CCWGG 2 cut(s) 167, 830
BcnI CCSGG 1 cut(s) 855
BcoDI GTCTC 2 cut(s) 437, 495
BfaI CTAG 2 cut(s) 161, 453
BfmI CTRYAG 1 cut(s) 564
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 2 cut(s) 246, 416
BlpI GCTNAGC 1 cut(s) 637
BlsI GCNGC 2 cut(s) 247, 417
BmcAI AGTACT 1 cut(s) 603
Bme1390I CCNGG 3 cut(s) 167, 830, 855
Bme18I GGWCC 2 cut(s) 357, 550
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 357, 550
BmiI GGNNCC 2 cut(s) 84, 702
BmrFI CCNGG 3 cut(s) 167, 830, 855
BmsI GCATC 3 cut(s) 115, 511, 712
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bpu1102I GCTNAGC 1 cut(s) 637
BpuMI CCSGG 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 828, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 391
BseBI CCWGG 2 cut(s) 167, 830
BseDI CCNNGG 2 cut(s) 828, 854
BseGI GGATG 2 cut(s) 516, 526
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 6 cut(s) 27, 499, 585, 593, 636, 890
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 2 cut(s) 161, 491
BseSI GKGCMC 1 cut(s) 619
BshFI GGCC 2 cut(s) 324, 415
BshNI GGYRCC 2 cut(s) 82, 700
BsiHKAI GWGCWC 3 cut(s) 153, 587, 619
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 854
BslFI GGGAC 2 cut(s) 18, 684
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 437, 495
BsmFI GGGAC 2 cut(s) 18, 684
BsnI GGCC 2 cut(s) 324, 415
Bso31I GGTCTC 1 cut(s) 495
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 3 cut(s) 153, 587, 619
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 2 cut(s) 337, 832
Bsp1720I GCTNAGC 1 cut(s) 637
BspACI CCGC 3 cut(s) 245, 248, 416
BspANI GGCC 2 cut(s) 324, 415
BspCNI CTCAG 6 cut(s) 26, 498, 586, 592, 635, 891
BspLI GGNNCC 2 cut(s) 84, 702
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 2 cut(s) 345, 840
BspT107I GGYRCC 2 cut(s) 82, 700
BspTNI GGTCTC 1 cut(s) 495
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 828, 854
BssMI GATC 2 cut(s) 337, 832
Bst2UI CCWGG 2 cut(s) 167, 830
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 870
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 8 cut(s) 13, 485, 579, 594, 611, 622, 637, 899
BstF5I GGATG 2 cut(s) 516, 526
BstKTI GATC 2 cut(s) 340, 835
BstMAI GTCTC 2 cut(s) 437, 495
BstMBI GATC 2 cut(s) 337, 832
BstMWI GCNNNNNNNGC 2 cut(s) 23, 157
BstNI CCWGG 2 cut(s) 167, 830
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 3 cut(s) 165, 828, 853
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 619
BsuRI GGCC 2 cut(s) 324, 415
BtsCI GGATG 2 cut(s) 516, 526
BtsIMutI CAGTG 2 cut(s) 587, 729
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 357, 550
CseI GACGC 1 cut(s) 837
Csp6I GTAC 6 cut(s) 83, 394, 602, 701, 775, 871
CviAII CATG 3 cut(s) 30, 505, 938
CviQI GTAC 6 cut(s) 83, 394, 602, 701, 775, 871
DdeI CTNAG 8 cut(s) 13, 485, 579, 594, 611, 622, 637, 899
DpnI GATC 2 cut(s) 339, 834
DpnII GATC 2 cut(s) 337, 832
DraIII CACNNNGTG 1 cut(s) 211
EaeI YGGCCR 2 cut(s) 322, 413
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 495
Eco47I GGWCC 2 cut(s) 357, 550
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 165, 828
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 3 cut(s) 33, 508, 941
FaqI GGGAC 2 cut(s) 18, 684
FatI CATG 3 cut(s) 29, 504, 937
Fnu4HI GCNGC 2 cut(s) 246, 416
FokI GGATG 2 cut(s) 523, 533
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 246, 416
FspBI CTAG 2 cut(s) 161, 453
GluI GCNGC 2 cut(s) 246, 416
HaeIII GGCC 2 cut(s) 324, 415
HapII CCGG 1 cut(s) 854
HgaI GACGC 1 cut(s) 837
Hin1II CATG 3 cut(s) 33, 508, 941
HinfI GANTC 2 cut(s) 5, 841
HpaII CCGG 1 cut(s) 854
HphI GGTGA 3 cut(s) 73, 145, 843
Hpy166II GTNNAC 2 cut(s) 382, 617
Hpy188I TCNGA 6 cut(s) 342, 361, 533, 625, 900, 925
Hpy188III TCNNGA 4 cut(s) 53, 100, 542, 719
Hpy8I GTNNAC 2 cut(s) 382, 617
HpyAV CCTTC 6 cut(s) 337, 459, 511, 736, 920, 925
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4V TGCA 4 cut(s) 128, 174, 617, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 157
HpyF3I CTNAG 8 cut(s) 13, 485, 579, 594, 611, 622, 637, 899
Hsp92II CATG 3 cut(s) 33, 508, 941
KpnI GGTACC 2 cut(s) 86, 704
Kzo9I GATC 2 cut(s) 337, 832
LmnI GCTCC 3 cut(s) 148, 478, 633
LweI GCATC 3 cut(s) 115, 511, 712
MaeI CTAG 2 cut(s) 161, 453
MaeIII GTNAC 4 cut(s) 223, 799, 849, 880
MalI GATC 2 cut(s) 339, 834
MboI GATC 2 cut(s) 337, 832
MboII GAAGA 4 cut(s) 287, 292, 668, 925
MhlI GDGCHC 3 cut(s) 153, 587, 619
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 2 cut(s) 288, 819
MluNI TGGCCA 1 cut(s) 324
MmeI TCCRAC 4 cut(s) 384, 451, 577, 721
MnlI CCTC 9 cut(s) 46, 57, 139, 400, 427, 469, 567, 588, 894
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 3 cut(s) 330, 509, 647
Msp20I TGGCCA 1 cut(s) 324
MspI CCGG 1 cut(s) 854
MspR9I CCNGG 3 cut(s) 167, 830, 855
MvaI CCWGG 2 cut(s) 167, 830
MwoI GCNNNNNNNGC 2 cut(s) 23, 157
NciI CCSGG 1 cut(s) 855
NdeII GATC 2 cut(s) 337, 832
NlaIII CATG 3 cut(s) 33, 508, 941
NlaIV GGNNCC 2 cut(s) 84, 702
NmuCI GTSAC 2 cut(s) 849, 880
NspI RCATGY 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 404
PciI ACATGT 1 cut(s) 937
PfeI GAWTC 2 cut(s) 5, 841
PkrI GCNGC 2 cut(s) 247, 417
PscI ACATGT 1 cut(s) 937
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 165, 828
PspGI CCWGG 2 cut(s) 165, 828
PspN4I GGNNCC 2 cut(s) 84, 702
PspPI GGNCC 2 cut(s) 357, 550
PspXI VCTCGAGB 1 cut(s) 404
RsaI GTAC 6 cut(s) 84, 395, 603, 702, 776, 872
RsaNI GTAC 6 cut(s) 83, 394, 602, 701, 775, 871
RseI CAYNNNNRTG 3 cut(s) 330, 509, 647
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 2 cut(s) 246, 416
Sau3AI GATC 2 cut(s) 337, 832
Sau96I GGNCC 2 cut(s) 357, 550
ScaI AGTACT 1 cut(s) 603
ScrFI CCNGG 3 cut(s) 167, 830, 855
SduI GDGCHC 3 cut(s) 153, 587, 619
SfaNI GCATC 3 cut(s) 115, 511, 712
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 2 cut(s) 357, 550
SlaI CTCGAG 1 cut(s) 404
SmiMI CAYNNNNRTG 3 cut(s) 330, 509, 647
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 2 cut(s) 288, 819
SsiI CCGC 3 cut(s) 245, 248, 416
SspMI CTAG 2 cut(s) 161, 453
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 165, 828, 853
TaaI ACNGT 1 cut(s) 733
TaqI TCGA 1 cut(s) 405
TasI AATT 2 cut(s) 288, 819
TatI WGTACW 4 cut(s) 393, 601, 774, 870
TauI GCSGC 2 cut(s) 248, 418
TfiI GAWTC 2 cut(s) 5, 841
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 2 cut(s) 587, 736
TseFI GTSAC 2 cut(s) 849, 880
Tsp45I GTSAC 2 cut(s) 849, 880
TspDTI ATGAA 2 cut(s) 120, 932
TspGWI ACGGA 3 cut(s) 222, 705, 855
TspRI CASTG 2 cut(s) 587, 736
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 2 cut(s) 357, 550
XceI RCATGY 1 cut(s) 941
XhoI CTCGAG 1 cut(s) 404
XspI CTAG 2 cut(s) 161, 453
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.