RLG00000024596

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000451
Physical Location & Seq
Reverse (-)
37345041 .. 37346408
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024596

Sequence Viewer

Length: 519 bp
ATGGGTTCAAGCACAGATGCAGCGCTTTCTGGCACATCTCTAACAGCACCAAATGTTCAAGAAATGGTGAGGAATGACCCTTTGCAGGTCCCTCAAAGATACTTCAGAAATGAAGTTGACGTGCCAAAGGATGGTGATACTTGTCATGATCGTTCTTCTAAGGATGCTCTTCTTGGACTACATCGAGAGCTGGTGCAAGCCTTGTCCGTCGGCTACTATCCTCCATGCTTTATGCCTGACAAGGTACTAGCAAATAATATTGAGATATTGAGTAACGGGAAGTACATGAGCATTGAACATAGAGTTGTAACAACTGAAACCAAGGCGAGGATGTCTTATGCATCTTTCTTTTTTCCACGTCACTATGTGGAAATCGAGCCATTGGAACATATAGTACTGGAGTCTCCAGGGTCCGTTAGGAAGTACAAGAAAGGGACATTTGAAAATTATCAGACCCAAGCTTTGAAGAATAAAATTGATGGGAAGGCACATACTGAATTTGCAAAGATCGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

7.01

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 86 - 119 9.1e-06 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 131
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 88
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 4 cut(s) 246, 284, 396, 425
AfeI AGCGCT 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 85, 131, 327
AgsI TTSAA 5 cut(s) 9, 59, 296, 443, 466
AjiI CACGTC 2 cut(s) 121, 359
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 190, 461
AluI AGCT 2 cut(s) 190, 461
Alw26I GTCTC 1 cut(s) 408
Aor51HI AGCGCT 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 445, 477
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 88, 411
AsuHPI GGTGA 2 cut(s) 79, 146
AvaII GGWCC 2 cut(s) 88, 411
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 125, 473
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 88, 411
BmgBI CACGTC 2 cut(s) 121, 359
BmgT120I GGNCC 2 cut(s) 88, 411
BmiI GGNNCC 2 cut(s) 90, 412
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 3 cut(s) 7, 154, 350
BpmI CTGGAG 2 cut(s) 390, 419
BsaJI CCNNGG 2 cut(s) 321, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 131, 327
Bse1I ACTGG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 321, 407
BseGI GGATG 3 cut(s) 136, 169, 336
BseLI CCNNNNNNNGG 3 cut(s) 85, 131, 327
BseNI ACTGG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 32
BslFI GGGAC 2 cut(s) 74, 448
BslI CCNNNNNNNGG 3 cut(s) 85, 131, 327
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 2 cut(s) 74, 448
Bsp143I GATC 2 cut(s) 148, 507
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 90, 412
BspMI ACCTGC 1 cut(s) 76
BspQI GCTCTTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 2 cut(s) 321, 407
BssMI GATC 2 cut(s) 148, 507
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 136, 169, 336
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 151, 510
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 148, 507
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 32
BtrI CACGTC 2 cut(s) 121, 359
BtsCI GGATG 3 cut(s) 136, 169, 336
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 145
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 88, 411
Csp6I GTAC 4 cut(s) 245, 283, 395, 424
CviAII CATG 3 cut(s) 146, 225, 286
CviJI RGCY 5 cut(s) 190, 200, 213, 379, 461
CviKI_1 RGCY 5 cut(s) 190, 200, 213, 379, 461
CviQI GTAC 4 cut(s) 245, 283, 395, 424
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 150, 509
DpnII GATC 2 cut(s) 148, 507
DraIII CACNNNGTG 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 88, 411
Eco47III AGCGCT 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 149, 228, 289
FaqI GGGAC 2 cut(s) 74, 448
FatI CATG 3 cut(s) 145, 224, 285
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 3 cut(s) 143, 176, 343
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 248
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 21
GsuI CTGGAG 2 cut(s) 390, 419
HaeII RGCGCY 1 cut(s) 26
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 149, 228, 289
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 1 cut(s) 401
HphI GGTGA 2 cut(s) 79, 146
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 107, 453, 512
Hpy188III TCNNGA 3 cut(s) 59, 146, 185
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 478
HpyCH4IV ACGT 2 cut(s) 120, 358
HpyCH4V TGCA 5 cut(s) 20, 85, 196, 341, 503
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 120, 358
Hsp92II CATG 3 cut(s) 149, 228, 289
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 148, 507
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 7 cut(s) 15, 71, 176, 249, 383, 393, 420
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 3 cut(s) 7, 154, 350
MaeI CTAG 1 cut(s) 248
MaeII ACGT 2 cut(s) 120, 358
MaeIII GTNAC 3 cut(s) 272, 307, 359
MalI GATC 2 cut(s) 150, 509
MboI GATC 2 cut(s) 148, 507
MboII GAAGA 3 cut(s) 147, 161, 478
MluCI AATT 3 cut(s) 445, 474, 497
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 4 cut(s) 63, 102, 231, 321
Mph1103I ATGCAT 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
NdeII GATC 2 cut(s) 148, 507
NlaIII CATG 3 cut(s) 149, 228, 289
NlaIV GGNNCC 2 cut(s) 90, 412
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 343
PagI TCATGA 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 131
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 90, 412
PspPI GGNCC 2 cut(s) 88, 411
PspPPI RGGWCCY 1 cut(s) 88
PsrI GAACNNNNNNTAC 2 cut(s) 378, 410
RsaI GTAC 4 cut(s) 246, 284, 396, 425
RsaNI GTAC 4 cut(s) 245, 283, 395, 424
SapI GCTCTTC 1 cut(s) 174
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 148, 507
Sau96I GGNCC 2 cut(s) 88, 411
ScaI AGTACT 1 cut(s) 396
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 408
SetI ASST 6 cut(s) 90, 123, 192, 246, 361, 463
SfaNI GCATC 3 cut(s) 7, 154, 350
SinI GGWCC 2 cut(s) 88, 411
Sse9I AATT 3 cut(s) 445, 474, 497
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 2 cut(s) 123, 361
TaqI TCGA 2 cut(s) 184, 375
TasI AATT 3 cut(s) 445, 474, 497
TatI WGTACW 3 cut(s) 282, 394, 423
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 2 cut(s) 196, 403
Van91I CCANNNNNTGG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 88, 411
XapI RAATTY 1 cut(s) 497
XspI CTAG 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.