Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000350.1

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

5352 .. 7422

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000350.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atgggatcaaactcagccctctatgccccatgtccgccactaccaaatgttcaagaaatggtgaggagtgacccttttcaggtgcctgaaagatacatcaggaatgaaaaggacattgcaaacgatgcagacttgtgtcctcaactttcctctgaggttcccatcatcgatttttctctgctctcaaatgggaacaaagaggagcttcacaagctggaccaggcttgcaaggaatggggattctttcacatggtgaatcatggtgtggcgacagaattgatgaagggcatgaaggattatgcgcagaagttctttgaacttccattagaagaaaagaacaaaattgctataccaccaaatgacatacaaggctatggccattcccattcggatcagatcctggattggtccgacaaacttgttcttatcgttcacccacaccactatagaaagctcgaggtctggccggccactccattcaaggaggctattgaggcatattctagtgaagttaaaagagttggagaggagctcttaaggtttatgtctttgatcatggggatggagaaggatgcttttcttgggctacatcaagagttggtgcaacccatgtcggtagcctactatcctcaatgctacttgcctgataaagtactaggacttggccctcactcagacaaagggaccataggcatacttatgcaagaagacgatgtaacgggactacaaatcaagcacgaaggaaaatgggtaccgatcaagccaattcccgacactttagtagtgaatgttggagacatgatggagatatggagtaatgggaaatacaagagtattgaacacagagttgtaacaaacgaaagcaaggcgaggatatcttgttcaacgttttatttaccacgtcatgatgtggaaattgaaccccttgatcaaatggtactcgagtcgccggagtcccttccgatgtacaaaaaggtcaaatatggagattatctgaggcaaactaagcatatgagatttgaagggaaggcgcatgtcattaaggttgctaagcttaattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

354

Amino Acids

40.57

Weight (kDa)

5.85

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
Acc65I	GGTACC	1 cut(s)	751
AccB1I	GGYRCC	2 cut(s)	82, 751
AciI	CCGC	1 cut(s)	35
AclI	AACGTT	1 cut(s)	887
AclWI	GGATC	3 cut(s)	13, 391, 399
AcoI	YGGCCR	3 cut(s)	376, 464, 468
AdeI	CACNNNGTG	1 cut(s)	253
AfaI	GTAC	4 cut(s)	654, 753, 939, 968
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflII	CTTAAG	1 cut(s)	535
AgsI	TTSAA	7 cut(s)	53, 317, 481, 839, 885, 920, 1022
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	2 cut(s)	219, 399
AloI	GAACNNNNNNTCC	2 cut(s)	865, 897
AluBI	AGCT	5 cut(s)	205, 214, 454, 532, 1054
AluI	AGCT	5 cut(s)	205, 214, 454, 532, 1054
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	3 cut(s)	13, 391, 399
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	2 cut(s)	455, 941
AoxI	GGCC	4 cut(s)	376, 464, 468, 664
Asp718I	GGTACC	1 cut(s)	751
AspLEI	GCGC	2 cut(s)	304, 1033
AspS9I	GGNCC	4 cut(s)	217, 408, 665, 684
AsuHPI	GGTGA	3 cut(s)	73, 265, 425
AvaI	CYCGRG	2 cut(s)	455, 941
AvaII	GGWCC	3 cut(s)	217, 408, 684
BaeI	ACNNNNGTAYC	2 cut(s)	929, 962
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	2 cut(s)	82, 751
BanII	GRGCYC	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	534
BccI	CCATC	3 cut(s)	170, 556, 796
BciT130I	CCWGG	2 cut(s)	221, 401
BclI	TGATCA	2 cut(s)	552, 928
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	2 cut(s)	504, 656
BfmI	CTRYAG	1 cut(s)	445
BfrI	CTTAAG	1 cut(s)	535
BlpI	GCTNAGC	1 cut(s)	1050
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	2 cut(s)	221, 401
Bme18I	GGWCC	3 cut(s)	217, 408, 684
BmeT110I	CYCGRG	2 cut(s)	455, 941
BmgBI	CACGTC	1 cut(s)	902
BmgT120I	GGNCC	4 cut(s)	217, 408, 665, 684
BmiI	GGNNCC	4 cut(s)	84, 159, 685, 753
BmrFI	CCNGG	2 cut(s)	221, 401
BmsI	GCATC	2 cut(s)	115, 562
BoxI	GACNNNNGTC	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	516, 548
Bpu1102I	GCTNAGC	1 cut(s)	1050
Bsa29I	ATCGAT	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	221, 401
BseCI	ATCGAT	1 cut(s)	168
BseGI	GGATG	2 cut(s)	567, 577
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	4 cut(s)	27, 144, 687, 986
BseRI	GAGGAG	3 cut(s)	79, 215, 542
BshFI	GGCC	4 cut(s)	378, 466, 470, 666
BshNI	GGYRCC	2 cut(s)	82, 751
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	2 cut(s)	455, 941
BsiSI	CCGG	2 cut(s)	467, 950
BslFI	GGGAC	3 cut(s)	697, 735, 940
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	789
BsmFI	GGGAC	3 cut(s)	697, 735, 940
BsnI	GGCC	4 cut(s)	378, 466, 470, 666
BsoBI	CYCGRG	2 cut(s)	455, 941
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp1407I	TGTACA	1 cut(s)	966
Bsp143I	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
Bsp1720I	GCTNAGC	1 cut(s)	1050
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	378, 466, 470, 666
BspCNI	CTCAG	4 cut(s)	26, 145, 686, 987
BspDI	ATCGAT	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	4 cut(s)	84, 159, 685, 753
BspPI	GGATC	3 cut(s)	13, 391, 399
BspT107I	GGYRCC	2 cut(s)	82, 751
BspTI	CTTAAG	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	966
BssAI	RCCGGY	1 cut(s)	466
BssMI	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
Bst2UI	CCWGG	2 cut(s)	221, 401
BstAFI	CTTAAG	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	966
BstC8I	GCNNGC	2 cut(s)	226, 468
BstDEI	CTNAG	6 cut(s)	13, 153, 673, 995, 1005, 1050
BstF5I	GGATG	2 cut(s)	567, 577
BstHHI	GCGC	2 cut(s)	304, 1033
BstKTI	GATC	6 cut(s)	8, 394, 399, 555, 759, 931
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 125, 211, 494, 1006
BstNI	CCWGG	2 cut(s)	221, 401
BstNSI	RCATGY	1 cut(s)	1037
BstPAI	GACNNNNGTC	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	219, 399
BstSFI	CTRYAG	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	4 cut(s)	378, 466, 470, 666
BsuTUI	ATCGAT	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	2 cut(s)	567, 577
Cac8I	GCNNGC	2 cut(s)	226, 468
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	2 cut(s)	304, 1033
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	4 cut(s)	217, 408, 665, 684
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	4 cut(s)	653, 752, 938, 967
CviAII	CATG	9 cut(s)	30, 250, 260, 289, 556, 610, 799, 905, 1034
CviQI	GTAC	4 cut(s)	653, 752, 938, 967
DdeI	CTNAG	6 cut(s)	13, 153, 673, 995, 1005, 1050
DpnI	GATC	6 cut(s)	7, 393, 398, 554, 758, 930
DpnII	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
DraIII	CACNNNGTG	1 cut(s)	253
EaeI	YGGCCR	3 cut(s)	376, 464, 468
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	876
Eco47I	GGWCC	3 cut(s)	217, 408, 684
Eco53kI	GAGCTC	1 cut(s)	532
Eco88I	CYCGRG	2 cut(s)	455, 941
EcoICRI	GAGCTC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	219, 399
EcoRV	GATATC	1 cut(s)	876
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	9 cut(s)	33, 253, 263, 292, 559, 613, 802, 908, 1037
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	3 cut(s)	697, 735, 940
FatI	CATG	9 cut(s)	29, 249, 259, 288, 555, 609, 798, 904, 1033
FauNDI	CATATG	1 cut(s)	1011
FbaI	TGATCA	2 cut(s)	552, 928
FokI	GGATG	2 cut(s)	574, 584
FriOI	GRGCYC	1 cut(s)	534
FseI	GGCCGGCC	1 cut(s)	470
FspBI	CTAG	2 cut(s)	504, 656
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	2 cut(s)	303, 1032
HaeIII	GGCC	4 cut(s)	378, 466, 470, 666
HapII	CCGG	2 cut(s)	467, 950
HhaI	GCGC	2 cut(s)	304, 1033
Hin1II	CATG	9 cut(s)	33, 253, 263, 292, 559, 613, 802, 908, 1037
Hin6I	GCGC	2 cut(s)	302, 1031
HinP1I	GCGC	2 cut(s)	302, 1031
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	4 cut(s)	240, 256, 944, 953
HpaII	CCGG	2 cut(s)	467, 950
HphI	GGTGA	3 cut(s)	73, 265, 425
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	7 cut(s)	154, 391, 396, 412, 676, 963, 996
Hpy188III	TCNNGA	5 cut(s)	53, 100, 593, 770, 905
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	7 cut(s)	277, 286, 562, 734, 968, 1016, 1021
HpyCH4IV	ACGT	2 cut(s)	887, 901
HpyCH4V	TGCA	5 cut(s)	119, 128, 228, 604, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 125, 211, 494, 1006
HpyF3I	CTNAG	6 cut(s)	13, 153, 673, 995, 1005, 1050
HpySE526I	ACGT	2 cut(s)	887, 901
Hsp92II	CATG	9 cut(s)	33, 253, 263, 292, 559, 613, 802, 908, 1037
HspAI	GCGC	2 cut(s)	302, 1031
KpnI	GGTACC	1 cut(s)	755
KroI	GCCGGC	1 cut(s)	466
KroNI	GCCGGC	1 cut(s)	468
Ksp22I	TGATCA	2 cut(s)	552, 928
Kzo9I	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
LmnI	GCTCC	2 cut(s)	202, 529
LweI	GCATC	2 cut(s)	115, 562
MaeI	CTAG	2 cut(s)	504, 656
MaeII	ACGT	2 cut(s)	887, 901
MaeIII	GTNAC	3 cut(s)	68, 715, 850
MalI	GATC	6 cut(s)	7, 393, 398, 554, 758, 930
MboI	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
MboII	GAAGA	2 cut(s)	341, 719
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	5 cut(s)	275, 342, 765, 915, 1057
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	953, 962
MmeI	TCCRAC	3 cut(s)	435, 502, 772
Mox20I	TGGCCA	1 cut(s)	378
MroNI	GCCGGC	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	4 cut(s)	513, 536, 1041, 1056
MslI	CAYNNNNRTG	2 cut(s)	560, 698
Msp20I	TGGCCA	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	2 cut(s)	467, 950
MspR9I	CCNGG	2 cut(s)	221, 401
MvaI	CCWGG	2 cut(s)	221, 401
MwoI	GCNNNNNNNGC	5 cut(s)	23, 125, 211, 494, 1006
NaeI	GCCGGC	1 cut(s)	468
NdeI	CATATG	1 cut(s)	1011
NdeII	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
NgoMIV	GCCGGC	1 cut(s)	466
NlaIII	CATG	9 cut(s)	33, 253, 263, 292, 559, 613, 802, 908, 1037
NlaIV	GGNNCC	4 cut(s)	84, 159, 685, 753
NmuCI	GTSAC	1 cut(s)	68
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	1037
PaeR7I	CTCGAG	2 cut(s)	455, 941
PagI	TCATGA	1 cut(s)	904
PdiI	GCCGGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	240, 256
PfoI	TCCNGGA	1 cut(s)	399
PleI	GAGTC	2 cut(s)	952, 961
PpsI	GAGTC	2 cut(s)	952, 961
PshAI	GACNNNNGTC	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	534
Psp1406I	AACGTT	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	219, 399
PspGI	CCWGG	2 cut(s)	219, 399
PspN4I	GGNNCC	4 cut(s)	84, 159, 685, 753
PspPI	GGNCC	4 cut(s)	217, 408, 665, 684
PspXI	VCTCGAGB	2 cut(s)	455, 941
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	396
RigI	GGCCGGCC	1 cut(s)	470
RsaI	GTAC	4 cut(s)	654, 753, 939, 968
RsaNI	GTAC	4 cut(s)	653, 752, 938, 967
RseI	CAYNNNNRTG	2 cut(s)	560, 698
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	513, 536, 1041, 1056
Sau3AI	GATC	6 cut(s)	5, 391, 396, 552, 756, 928
Sau96I	GGNCC	4 cut(s)	217, 408, 665, 684
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	2 cut(s)	953, 962
ScrFI	CCNGG	2 cut(s)	221, 401
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	115, 562
SfcI	CTRYAG	1 cut(s)	445
Sfr274I	CTCGAG	2 cut(s)	455, 941
SinI	GGWCC	3 cut(s)	217, 408, 684
SlaI	CTCGAG	2 cut(s)	455, 941
SmiMI	CAYNNNNRTG	2 cut(s)	560, 698
SmlI	CTYRAG	3 cut(s)	455, 535, 941
SmoI	CTYRAG	3 cut(s)	455, 535, 941
Sse9I	AATT	5 cut(s)	275, 342, 765, 915, 1057
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	504, 656
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	219, 399
TaiI	ACGT	2 cut(s)	890, 904
TaqI	TCGA	3 cut(s)	168, 456, 942
TasI	AATT	5 cut(s)	275, 342, 765, 915, 1057
TatI	WGTACW	2 cut(s)	652, 966
TfiI	GAWTC	2 cut(s)	240, 256
Tru1I	TTAA	4 cut(s)	513, 536, 1041, 1056
Tru9I	TTAA	4 cut(s)	513, 536, 1041, 1056
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	120, 296, 305
Vha464I	CTTAAG	1 cut(s)	535
VpaK11BI	GGWCC	3 cut(s)	217, 408, 684
XceI	RCATGY	1 cut(s)	1037
XhoI	CTCGAG	2 cut(s)	455, 941
XspI	CTAG	2 cut(s)	504, 656
ZrmI	AGTACT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.