RLG00000024602

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000451
Physical Location & Seq
Reverse (-)
37419687 .. 37421870
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024602

Sequence Viewer

Length: 942 bp
ATGAGTTCAGGTACAGATGTAGGATTAGTTCAAGTAGAGGTTGCACCTACTTTTGCTCCATCTCTCCCAGTGCCAAATGTTCAAGAGATTGTGAGGACTGACCCTTTGCAGGTCCCCGAAAGATACCTTAGGGATCAAGAAGCGAATCCAGAGAATAAAGATCACACTACTTCCGACCTATCTACGGAGATTCCTATCATTGATTTTTCTCTTCTTTCGAAAGGGAACAAGGAGGAGCTTGACAAATTGGACATGGCTTGCCAAGAATGGGGATTCTTTCAGATTCTGGATTGGTCTGATGCATTGATACTCATCGTGTACCCAACTCTTTATAGAAAGCTTGAGTTTTGGCCAGCAGTACCAGAGAAATTCAAGGAGGTTCTTGAGGCATATTCTAGTGAAGTTAAAAGAGTAGGAGAGGAGCTTCTAATGTCTCTATCGATACTCATGGGCATGGAGAAGGATTCTCTTATTGGCCTCCATAACCAGTTTTTACAAGGTGTGAGGGTGAACTACTATCCTCCATGCTCCATGCCTCATAAAGTACTAGGACTGAGTCCACACTCGGACACGAGCACTATAACCATACTTATGCAAGAAGACGATGTCACCGGTTTGCAGATTCAGAAAGGAGGAGAATGGGTGTCAGTCGAGCCAATTCCAAACGCTCTTGTTGTGAATGTTGGAGATGTTCTTGAGATATGGACTAATGGGAAGTACAAGAGCATTGAGCACAGAGCTGTGACGACCAAAAACAAGGCAAGGTTATCCTATGCAACATTTCTTTGCCCACATGACGATGTGGAAGTTGAACCAATTTATGATATTGTGGAGTCACATATGATGTACAAGAAAGTCAGATATGGAGATTATCTCAGACAGTCCATGAAGATGAAGCATGCGGGGAAGGCACACACTCAAATGGCGAAGATCGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

314

Amino Acids

35.5

Weight (kDa)

5.12

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 64 - 95 2.7e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 167 - 264 6.8e-35 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AciI CCGC 1 cut(s) 902
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 350
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 6 cut(s) 13, 320, 360, 546, 719, 848
AfiI CCNNNNNNNGG 3 cut(s) 109, 184, 268
AgeI ACCGGT 1 cut(s) 611
AgsI TTSAA 4 cut(s) 32, 83, 373, 812
AluBI AGCT 5 cut(s) 238, 340, 424, 740, 939
AluI AGCT 5 cut(s) 238, 340, 424, 740, 939
Alw21I GWGCWC 2 cut(s) 578, 735
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 286
AoxI GGCC 2 cut(s) 350, 475
ApoI RAATTY 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 520, 601
AsuII TTCGAA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 128
BaeI ACNNNNGTAYC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 352
BauI CACGAG 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 578, 735
BccI CCATC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 396, 548
BfuAI ACCTGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 606
BplI GAGNNNNNCTC 2 cut(s) 858, 890
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 3 cut(s) 362, 404, 716
Bsa29I ATCGAT 1 cut(s) 440
BsaBI GATNNNNATC 2 cut(s) 194, 311
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 627, 657
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 184, 268
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 2 cut(s) 68, 487
Bse21I CCTNAGG 1 cut(s) 128
Bse8I GATNNNNATC 2 cut(s) 194, 311
BseCI ATCGAT 1 cut(s) 440
BseJI GATNNNNATC 2 cut(s) 194, 311
BseLI CCNNNNNNNGG 3 cut(s) 109, 184, 268
BseMII CTCAG 2 cut(s) 545, 889
BseNI ACTGG 2 cut(s) 68, 487
BseRI GAGGAG 3 cut(s) 248, 434, 648
BshFI GGCC 2 cut(s) 352, 477
BshTI ACCGGT 1 cut(s) 611
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 2 cut(s) 578, 735
BsiSI CCGG 1 cut(s) 612
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 109, 184, 268
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 2 cut(s) 352, 477
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 578, 735
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 3 cut(s) 133, 160, 930
BspACI CCGC 1 cut(s) 902
BspANI GGCC 2 cut(s) 352, 477
BspCNI CTCAG 2 cut(s) 546, 888
BspDI ATCGAT 1 cut(s) 440
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 611
BsrGI TGTACA 1 cut(s) 846
BsrI ACTGG 2 cut(s) 68, 487
BssAI RCCGGY 1 cut(s) 611
BssMI GATC 3 cut(s) 133, 160, 930
BssSI CACGAG 1 cut(s) 571
Bst2BI CACGAG 1 cut(s) 571
Bst4CI ACNGT 1 cut(s) 882
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 259, 354, 900
BstDEI CTNAG 3 cut(s) 128, 554, 875
BstKTI GATC 3 cut(s) 136, 163, 933
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 3 cut(s) 133, 160, 930
BstMWI GCNNNNNNNGC 1 cut(s) 908
BstNSI RCATGY 1 cut(s) 902
BstV2I GAAGAC 1 cut(s) 606
Bsu15I ATCGAT 1 cut(s) 440
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 2 cut(s) 352, 477
BsuTUI ATCGAT 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 259, 354, 900
CaiI CAGNNNCTG 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 611
Cfr13I GGNCC 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 440
Csp6I GTAC 6 cut(s) 12, 319, 359, 545, 718, 847
CspAI ACCGGT 1 cut(s) 611
CviAII CATG 8 cut(s) 253, 448, 454, 525, 532, 794, 886, 899
CviJI RGCY 9 cut(s) 238, 257, 340, 352, 424, 477, 655, 740, 939
CviKI_1 RGCY 9 cut(s) 238, 257, 340, 352, 424, 477, 655, 740, 939
CviQI GTAC 6 cut(s) 12, 319, 359, 545, 718, 847
DdeI CTNAG 3 cut(s) 128, 554, 875
DpnI GATC 3 cut(s) 135, 162, 932
DpnII GATC 3 cut(s) 133, 160, 930
EaeI YGGCCR 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 8 cut(s) 256, 451, 457, 528, 535, 797, 889, 902
FaqI GGGAC 1 cut(s) 98
FatI CATG 8 cut(s) 252, 447, 453, 524, 531, 793, 885, 898
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 1 cut(s) 840
FspBI CTAG 2 cut(s) 396, 548
HaeIII GGCC 2 cut(s) 352, 477
HapII CCGG 1 cut(s) 612
Hin1II CATG 8 cut(s) 256, 451, 457, 528, 535, 797, 889, 902
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 8 cut(s) 145, 190, 273, 283, 464, 556, 622, 833
HpaII CCGG 1 cut(s) 612
HphI GGTGA 2 cut(s) 520, 601
Hpy166II GTNNAC 3 cut(s) 319, 511, 560
Hpy188I TCNGA 7 cut(s) 175, 282, 298, 568, 627, 860, 878
Hpy188III TCNNGA 6 cut(s) 83, 137, 149, 287, 383, 695
Hpy8I GTNNAC 3 cut(s) 319, 511, 560
HpyAV CCTTC 2 cut(s) 454, 901
HpyCH4III ACNGT 1 cut(s) 882
HpyCH4V TGCA 6 cut(s) 44, 109, 302, 595, 619, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 908
HpyF3I CTNAG 3 cut(s) 128, 554, 875
Hsp92II CATG 8 cut(s) 256, 451, 457, 528, 535, 797, 889, 902
Kzo9I GATC 3 cut(s) 133, 160, 930
LmnI GCTCC 4 cut(s) 61, 235, 421, 533
LpnPI CCDG 8 cut(s) 81, 95, 162, 272, 366, 375, 500, 625
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 396, 548
MaeIII GTNAC 3 cut(s) 607, 742, 834
MalI GATC 3 cut(s) 135, 162, 932
MboI GATC 3 cut(s) 133, 160, 930
MboII GAAGA 4 cut(s) 203, 611, 901, 940
MhlI GDGCHC 2 cut(s) 578, 735
MlsI TGGCCA 1 cut(s) 352
MluCI AATT 4 cut(s) 245, 368, 657, 816
MluNI TGGCCA 1 cut(s) 352
MlyI GAGTC 2 cut(s) 565, 842
MmeI TCCRAC 2 cut(s) 198, 664
Mox20I TGGCCA 1 cut(s) 352
Mph1103I ATGCAT 1 cut(s) 304
MscI TGGCCA 1 cut(s) 352
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 5 cut(s) 452, 590, 798, 890, 920
Msp20I TGGCCA 1 cut(s) 352
MspI CCGG 1 cut(s) 612
MwoI GCNNNNNNNGC 1 cut(s) 908
NdeI CATATG 1 cut(s) 840
NdeII GATC 3 cut(s) 133, 160, 930
NlaIII CATG 8 cut(s) 256, 451, 457, 528, 535, 797, 889, 902
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 3 cut(s) 607, 742, 834
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 1 cut(s) 902
NspV TTCGAA 1 cut(s) 218
PaeI GCATGC 1 cut(s) 902
PfeI GAWTC 6 cut(s) 145, 190, 273, 283, 464, 622
PflFI GACNNNGTC 2 cut(s) 555, 605
PinAI ACCGGT 1 cut(s) 611
PleI GAGTC 2 cut(s) 564, 841
PpsI GAGTC 2 cut(s) 564, 841
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
PstNI CAGNNNCTG 1 cut(s) 286
PsyI GACNNNGTC 2 cut(s) 555, 605
RsaI GTAC 6 cut(s) 13, 320, 360, 546, 719, 848
RsaNI GTAC 6 cut(s) 12, 319, 359, 545, 718, 847
RseI CAYNNNNRTG 5 cut(s) 452, 590, 798, 890, 920
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 3 cut(s) 133, 160, 930
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 546
SchI GAGTC 2 cut(s) 565, 842
SduI GDGCHC 2 cut(s) 578, 735
SfaNI GCATC 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 5 cut(s) 452, 590, 798, 890, 920
SmlI CTYRAG 3 cut(s) 341, 383, 695
SmoI CTYRAG 3 cut(s) 341, 383, 695
SphI GCATGC 1 cut(s) 902
Sse9I AATT 4 cut(s) 245, 368, 657, 816
SsiI CCGC 1 cut(s) 902
SspMI CTAG 2 cut(s) 396, 548
TaaI ACNGT 1 cut(s) 882
TaqI TCGA 4 cut(s) 218, 440, 651, 933
TasI AATT 4 cut(s) 245, 368, 657, 816
TatI WGTACW 3 cut(s) 544, 717, 846
TfiI GAWTC 6 cut(s) 145, 190, 273, 283, 464, 622
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 3 cut(s) 607, 742, 834
Tsp45I GTSAC 3 cut(s) 607, 742, 834
TspDTI ATGAA 2 cut(s) 902, 908
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 75
Tth111I GACNNNGTC 2 cut(s) 555, 605
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 902
XspI CTAG 2 cut(s) 396, 548
ZrmI AGTACT 1 cut(s) 546
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.