MD04G1132000.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000451
Physical Location & Seq
Reverse (-)
21870841 .. 21871162
322 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1132000.v1.1.491

Sequence Viewer

Length: 234 bp
ATGCCGATCCCGAACGCTTTCGTTGTGAATGTGGGAGATGTTACTGAGATATGGAGTAATGGGAGGTACAAGAGCATTGAACATAGAATCGTCGCAAACGAAAGGAAGGCGAGAATATCTTATGCATCCTTCATTTGTCCACATTTTAATGTGGAAATTGGACCGTTGGATCAAATGGTAGACACATCAAGAATGTACAAGAAAATCAAATATGGTGGTTATCTGATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

78

Amino Acids

8.87

Weight (kDa)

9.21

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 2 - 47 1e-13 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AclWI GGATC 1 cut(s) 177
AfaI GTAC 2 cut(s) 68, 197
AgsI TTSAA 1 cut(s) 80
AlwI GGATC 1 cut(s) 177
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 134
BseGI GGATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 36
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 2 cut(s) 6, 169
BspCNI CTCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 195
BssMI GATC 2 cut(s) 6, 169
Bst4CI ACNGT 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 2 cut(s) 9, 172
BstMBI GATC 2 cut(s) 6, 169
BtsCI GGATG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 67, 196
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviQI GTAC 2 cut(s) 67, 196
DdeI CTNAG 1 cut(s) 45
DpnI GATC 2 cut(s) 8, 171
DpnII GATC 2 cut(s) 6, 169
Eco47I GGWCC 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 127
FaiI YATR 4 cut(s) 52, 84, 123, 213
FblI GTMKAC 1 cut(s) 180
FokI GGATG 1 cut(s) 112
HinfI GANTC 1 cut(s) 87
Hpy166II GTNNAC 2 cut(s) 140, 181
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 10, 189
Hpy8I GTNNAC 2 cut(s) 140, 181
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 100, 139
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 45
Kzo9I GATC 2 cut(s) 6, 169
LweI GCATC 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 8, 171
MboI GATC 2 cut(s) 6, 169
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 147
NdeII GATC 2 cut(s) 6, 169
NsiI ATGCAT 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 161
RsaI GTAC 2 cut(s) 68, 197
RsaNI GTAC 2 cut(s) 67, 196
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 147
Sau3AI GATC 2 cut(s) 6, 169
Sau96I GGNCC 1 cut(s) 161
SetI ASST 1 cut(s) 68
SfaNI GCATC 1 cut(s) 134
SgeI CNNG 5 cut(s) 22, 82, 123, 201, 211
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 156
TaaI ACNGT 1 cut(s) 165
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.