Rmu_co8388385.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8388385.1
Physical Location & Seq
Reverse (-)
1 .. 600
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8388385.1_g000001.1.cds

Sequence Viewer

Length: 398 bp
atggggatggagaaggatgcttttcttgggctacatcaagagttggtgcaacccatgtcggtagcctactatcctcaatgctacttgcctgataaagtactaggacttggccctcactcagacaaagggaccataggcatacttatgcaagaagacgatgtaacgggactacaaatcaagcacgaagggaaatgggtaccgatcaagccaattcccgacactttagtagtgaatgttggagacatgatggagatatggagtaatgggaaatacaagagtattgaacacagagttgtaacaaacgaaagcaaggcgaggatatcttgttcaacgttttatttaccacgtcatgatgtggaaattgaaccccttgatcaaatggtactcgagtcgccggg

Protein Analysis

133

Amino Acids

14.95

Weight (kDa)

5.1

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 196
AccB1I GGYRCC 1 cut(s) 196
AclI AACGTT 1 cut(s) 332
AfaI GTAC 3 cut(s) 99, 198, 384
AgsI TTSAA 3 cut(s) 284, 330, 365
AjiI CACGTC 1 cut(s) 347
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
Alw26I GTCTC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 1 cut(s) 109
Asp718I GGTACC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 110, 129
AsuC2I CCSGG 1 cut(s) 396
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 129
BaeI ACNNNNGTAYC 1 cut(s) 374
BanI GGYRCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 159
BccI CCATC 1 cut(s) 241
BclI TGATCA 1 cut(s) 373
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 101
BmcAI AGTACT 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 110, 129
BmiI GGNNCC 2 cut(s) 130, 198
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 12, 22
BseMII CTCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 2 cut(s) 142, 180
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 142, 180
BsnI GGCC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 2 cut(s) 201, 373
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 130, 198
BspT107I GGYRCC 1 cut(s) 196
BssMI GATC 2 cut(s) 201, 373
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 12, 22
BstKTI GATC 2 cut(s) 204, 376
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 201, 373
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 111
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 12, 22
CciI TCATGA 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 110, 129
Csp6I GTAC 3 cut(s) 98, 197, 383
CviAII CATG 3 cut(s) 55, 244, 350
CviJI RGCY 4 cut(s) 31, 65, 111, 208
CviKI_1 RGCY 4 cut(s) 31, 65, 111, 208
CviQI GTAC 3 cut(s) 98, 197, 383
DdeI CTNAG 1 cut(s) 118
DpnI GATC 2 cut(s) 203, 375
DpnII GATC 2 cut(s) 201, 373
Eco32I GATATC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 386
EcoRV GATATC 1 cut(s) 321
FaeI CATG 3 cut(s) 58, 247, 353
FaiI YATR 7 cut(s) 56, 134, 140, 146, 245, 256, 351
FaqI GGGAC 2 cut(s) 142, 180
FatI CATG 3 cut(s) 54, 243, 349
FbaI TGATCA 1 cut(s) 373
FokI GGATG 2 cut(s) 19, 29
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 395
Hin1II CATG 3 cut(s) 58, 247, 353
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 38, 215, 350
HpyAV CCTTC 2 cut(s) 7, 179
HpyCH4IV ACGT 2 cut(s) 332, 346
HpyCH4V TGCA 2 cut(s) 49, 148
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 2 cut(s) 332, 346
Hsp92II CATG 3 cut(s) 58, 247, 353
KpnI GGTACC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 201, 373
LpnPI CCDG 1 cut(s) 102
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 101
MaeII ACGT 2 cut(s) 332, 346
MaeIII GTNAC 2 cut(s) 160, 295
MalI GATC 2 cut(s) 203, 375
MboI GATC 2 cut(s) 201, 373
MboII GAAGA 1 cut(s) 164
MluCI AATT 2 cut(s) 210, 360
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 3 cut(s) 84, 123, 309
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 396
NciI CCSGG 1 cut(s) 396
NdeII GATC 2 cut(s) 201, 373
NlaIII CATG 3 cut(s) 58, 247, 353
NlaIV GGNNCC 2 cut(s) 130, 198
PaeR7I CTCGAG 1 cut(s) 386
PagI TCATGA 1 cut(s) 349
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp1406I AACGTT 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 130, 198
PspPI GGNCC 2 cut(s) 110, 129
PspXI VCTCGAGB 1 cut(s) 386
RsaI GTAC 3 cut(s) 99, 198, 384
RsaNI GTAC 3 cut(s) 98, 197, 383
RseI CAYNNNNRTG 1 cut(s) 143
Sau3AI GATC 2 cut(s) 201, 373
Sau96I GGNCC 2 cut(s) 110, 129
ScaI AGTACT 1 cut(s) 99
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 396
SetI ASST 2 cut(s) 335, 349
SfaNI GCATC 1 cut(s) 7
Sfr274I CTCGAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 210, 360
SspMI CTAG 1 cut(s) 101
TaiI ACGT 2 cut(s) 335, 349
TaqI TCGA 1 cut(s) 387
TasI AATT 2 cut(s) 210, 360
TatI WGTACW 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 386
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.