Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

6285395 .. 6286018

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0080300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTTTGCTAGTAAGTTAGTACTTGTTTCATTACTGTTGGTTGTGTTCCTCATGATCAATATCAAACCGTCACTGAGTCAAAGCACACAGCAACTGATCGAGAAGATATGCCGGTCCACAGAGGACTATGGGTTTTGCAGGAGAACTTTCCAAGCACACTTGAAGTCCCCAAATGCCAATATTGTTGACCTAACCCAGATAACCCTAGAGGTGGCAACAGACCACGCAACTAAAACTCACGAGTTTATCAGGCAGACGCTTGAAACAACAAGAGACCCGGCGTTGAAGAACGCTCTTACCGAGTGTGAGAATGCTTATGGTCTAATCATGCATGCATTTGACTTGGCGGTGGTGTCGTTTTTCTTCGGCGACTACAAAAATATTGAGAAGGAGGAGCGCATCACACCGCGAACAGAAGCGAGCTGCGAAGCAACACTCTACACGCCGCCAAATAAGCAGAAGCACATTTTGGACGAAGGAAGCAGGGAAATGAGGATTTTCATTGGCATGTCGCTGGTTTCAGCGCAGGAACTCGTTCGATCAAGGCTTAAGCCTGCACCTGCTCCTGCCCCTGCTCCGCTGTTCGTAACACCACCATCCAAGGCATCCGTTTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

207

Amino Acids

23.22

Weight (kDa)

7.71

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	33 - 120	2.9e-13	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	571
AccII	CGCG	1 cut(s)	412
AciI	CCGC	4 cut(s)	350, 410, 449, 581
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	166, 266, 289
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	1 cut(s)	426
AluI	AGCT	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	402, 529
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	1 cut(s)	607
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	12, 209
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	2 cut(s)	427, 449
BlsI	GCNGC	2 cut(s)	428, 450
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	411, 617
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	599, 608
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	115, 281
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	57, 99, 542
BspACI	CCGC	4 cut(s)	350, 410, 449, 581
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	3 cut(s)	57, 99, 542
BssSI	CACGAG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	39, 72
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	336, 424, 558
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	599, 608
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	2 cut(s)	402, 529
BstKTI	GATC	3 cut(s)	60, 102, 545
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	57, 99, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNSI	RCATGY	2 cut(s)	338, 514
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	599, 608
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	336, 424, 558
CaiI	CAGNNNCTG	1 cut(s)	97
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	2 cut(s)	402, 529
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	4 cut(s)	55, 331, 335, 511
CviJI	RGCY	4 cut(s)	5, 426, 550, 556
CviKI_1	RGCY	4 cut(s)	5, 426, 550, 556
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	59, 101, 544
DpnII	GATC	3 cut(s)	57, 99, 542
Eco130I	CCWWGG	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	603
EcoT22I	ATGCAT	2 cut(s)	336, 340
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	4 cut(s)	58, 334, 338, 514
FaiI	YATR	7 cut(s)	56, 112, 132, 321, 332, 336, 512
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	4 cut(s)	54, 330, 334, 510
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	427, 449
FokI	GGATG	2 cut(s)	586, 595
Fsp4HI	GCNGC	2 cut(s)	427, 449
FspBI	CTAG	2 cut(s)	12, 209
GlaI	GCGC	2 cut(s)	401, 528
GluI	GCNGC	2 cut(s)	427, 449
HapII	CCGG	2 cut(s)	115, 281
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	402, 529
Hin1II	CATG	4 cut(s)	58, 334, 338, 514
Hin6I	GCGC	2 cut(s)	400, 527
HinP1I	GCGC	2 cut(s)	400, 527
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	115, 281
Hpy166II	GTNNAC	2 cut(s)	120, 190
Hpy188III	TCNNGA	3 cut(s)	55, 103, 242
Hpy8I	GTNNAC	2 cut(s)	120, 190
HpyAV	CCTTC	2 cut(s)	385, 473
HpyCH4III	ACNGT	2 cut(s)	39, 72
HpyCH4V	TGCA	4 cut(s)	141, 334, 338, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	58, 334, 338, 514
HspAI	GCGC	2 cut(s)	400, 527
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 99, 542
LmnI	GCTCC	3 cut(s)	397, 571, 583
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	2 cut(s)	411, 617
MaeI	CTAG	2 cut(s)	12, 209
MaeIII	GTNAC	2 cut(s)	72, 589
MalI	GATC	3 cut(s)	59, 101, 544
MboI	GATC	3 cut(s)	57, 99, 542
MboII	GAAGA	3 cut(s)	118, 301, 358
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	62, 118, 205, 388, 489
Mph1103I	ATGCAT	2 cut(s)	336, 340
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	552, 622
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	583
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	2 cut(s)	115, 281
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	319
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	3 cut(s)	57, 99, 542
NlaIII	CATG	4 cut(s)	58, 334, 338, 514
NmuCI	GTSAC	1 cut(s)	72
NsiI	ATGCAT	2 cut(s)	336, 340
NspI	RCATGY	2 cut(s)	338, 514
PaeI	GCATGC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	537
PkrI	GCNGC	2 cut(s)	428, 450
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	552, 622
SatI	GCNGC	2 cut(s)	427, 449
Sau3AI	GATC	3 cut(s)	57, 99, 542
Sau96I	GGNCC	1 cut(s)	117
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	4 cut(s)	195, 216, 428, 565
SfaNI	GCATC	2 cut(s)	411, 617
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	338
SsiI	CCGC	4 cut(s)	350, 410, 449, 581
SspI	AATATT	2 cut(s)	184, 385
SspMI	CTAG	2 cut(s)	12, 209
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	39, 72
TaqI	TCGA	2 cut(s)	102, 541
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	1 cut(s)	451
Tru1I	TTAA	2 cut(s)	552, 622
Tru9I	TTAA	2 cut(s)	552, 622
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	3 cut(s)	21, 493, 608
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	1 cut(s)	81
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	2 cut(s)	338, 514
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	12, 209
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	2 cut(s)	336, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.