RLG00000024600

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
37371700 .. 37373803
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024600

Sequence Viewer

Length: 918 bp
ATGGGATCAAACTCCGCCCTCTATGCCCCATGTCCTCCACTACCAAATGTTCAAGAAATGGTGAGGAGTGACCCTTTTCAGGTGCCTGAAAGATACATCAGGAATGAAAAGGACATTGCAAACGATGCAGACTTGTGTCCTCAACTTTCCTCTGAGGTTCCCATCATCGATTTTTCTCTGCTCTCAAATGGGAACAAAGAGGAGCTTTACAAGCTGGACCAGGCTTGCAAGGAATGGGGATTCTTTCAGATCCTGGATTGGTCCGACAAACTTGTTCTTATCGTTCATCCACACCACTATAGAAAGCTCGAGGTCTGGCCGGCCACTCCATTCAAGGAGGCTATTGAGGCATATTCTAGTGAAGTTAAAAGAGTTGGAGAGGAGCTCCTAAGGTTTATGTCTTTGATTATGGGGATGGAGAAGGATGCTTTTCTTGGGCTACATCAAGAGCTGGTGCAACCCATGTCGGGAGCCTACTATCCTCAGTGCTACATGCCTGATAAAGTACTAGGACTTGGCCCTCACTCAGACAAAGGCACCATAGGCATACTTATGCAAGAAGAGGATGTAACGGGACTACAAATCAAGCACGAAGGAAAATGGGTACCGATCAAGCCAATTCCCGACACTTTCGTAGTGAATGTTGGAGATATGATGGAGATATGGAGTAATGGGAAATACAAGAGCATTGAACACAGAGTTGTAACAAACGAAAGCAAGGCGAGGATATCTTATTCAACGTTTTATTTACCACGTCATGATGTGGAAATTGAACCCCTTGATCAAATGGTACTCGAGTCGCCGGAGTCCCTTCCGATGTACAAAAAGGTCAAATATGGAGATTATCTAAGGCAAACTAAGCATATGAGATTTGAAGGGAAGGCGCATGTCATTAAGGTTGCTAAGCTTAATTGGTAG

Protein Analysis

306

Amino Acids

35.13

Weight (kDa)

5.73

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 84 3.1e-06 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 158 - 251 6.7e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 3 cut(s) 82, 536, 604
AciI CCGC 1 cut(s) 15
AclI AACGTT 1 cut(s) 740
AclWI GGATC 2 cut(s) 13, 244
AcoI YGGCCR 2 cut(s) 317, 321
AfaI GTAC 4 cut(s) 507, 606, 792, 821
AfiI CCNNNNNNNGG 2 cut(s) 79, 467
AgsI TTSAA 6 cut(s) 53, 334, 692, 738, 773, 875
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 2 cut(s) 219, 252
AluBI AGCT 6 cut(s) 205, 214, 307, 385, 451, 907
AluI AGCT 6 cut(s) 205, 214, 307, 385, 451, 907
Alw21I GWGCWC 1 cut(s) 387
AlwI GGATC 2 cut(s) 13, 244
AlwNI CAGNNNCTG 1 cut(s) 253
Ama87I CYCGRG 2 cut(s) 308, 794
AoxI GGCC 3 cut(s) 317, 321, 517
Asp718I GGTACC 1 cut(s) 604
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 3 cut(s) 217, 261, 518
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 2 cut(s) 308, 794
AvaII GGWCC 2 cut(s) 217, 261
AxyI CCTNAGG 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 782, 815
BanI GGYRCC 3 cut(s) 82, 536, 604
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 387
BccI CCATC 3 cut(s) 170, 409, 649
BciT130I CCWGG 2 cut(s) 221, 254
BclI TGATCA 1 cut(s) 781
BfaI CTAG 2 cut(s) 357, 509
BfmI CTRYAG 1 cut(s) 298
BlpI GCTNAGC 1 cut(s) 903
BmcAI AGTACT 1 cut(s) 507
Bme1390I CCNGG 2 cut(s) 221, 254
Bme18I GGWCC 2 cut(s) 217, 261
BmeT110I CYCGRG 2 cut(s) 308, 794
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 3 cut(s) 217, 261, 518
BmiI GGNNCC 5 cut(s) 84, 159, 472, 538, 606
BmrFI CCNGG 2 cut(s) 221, 254
BmsI GCATC 2 cut(s) 115, 415
BoxI GACNNNNGTC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 369, 401
Bpu1102I GCTNAGC 1 cut(s) 903
Bsa29I ATCGAT 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 467
Bse118I RCCGGY 1 cut(s) 319
Bse21I CCTNAGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 221, 254
BseCI ATCGAT 1 cut(s) 168
BseGI GGATG 4 cut(s) 286, 420, 430, 571
BseLI CCNNNNNNNGG 2 cut(s) 79, 467
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 144, 497, 540
BseRI GAGGAG 3 cut(s) 79, 215, 395
BshFI GGCC 3 cut(s) 319, 323, 519
BshNI GGYRCC 3 cut(s) 82, 536, 604
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 308, 794
BsiSI CCGG 2 cut(s) 320, 803
BslFI GGGAC 2 cut(s) 588, 793
BslI CCNNNNNNNGG 2 cut(s) 79, 467
BsmFI GGGAC 2 cut(s) 588, 793
BsnI GGCC 3 cut(s) 319, 323, 519
BsoBI CYCGRG 2 cut(s) 308, 794
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 4 cut(s) 5, 249, 609, 781
Bsp1720I GCTNAGC 1 cut(s) 903
BspACI CCGC 1 cut(s) 15
BspANI GGCC 3 cut(s) 319, 323, 519
BspCNI CTCAG 3 cut(s) 145, 496, 539
BspDI ATCGAT 1 cut(s) 168
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 5 cut(s) 84, 159, 472, 538, 606
BspPI GGATC 2 cut(s) 13, 244
BspT107I GGYRCC 3 cut(s) 82, 536, 604
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 819
BssAI RCCGGY 1 cut(s) 319
BssMI GATC 4 cut(s) 5, 249, 609, 781
Bst2UI CCWGG 2 cut(s) 221, 254
Bst6I CTCTTC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 2 cut(s) 226, 321
BstDEI CTNAG 7 cut(s) 153, 389, 483, 526, 848, 858, 903
BstF5I GGATG 4 cut(s) 286, 420, 430, 571
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 4 cut(s) 8, 252, 612, 784
BstMBI GATC 4 cut(s) 5, 249, 609, 781
BstMWI GCNNNNNNNGC 6 cut(s) 23, 125, 211, 347, 543, 859
BstNI CCWGG 2 cut(s) 221, 254
BstNSI RCATGY 2 cut(s) 496, 890
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 219, 252
BstSFI CTRYAG 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 389
BsuRI GGCC 3 cut(s) 319, 323, 519
BsuTUI ATCGAT 1 cut(s) 168
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 4 cut(s) 286, 420, 430, 571
BtsIMutI CAGTG 1 cut(s) 491
Cac8I GCNNGC 2 cut(s) 226, 321
CaiI CAGNNNCTG 1 cut(s) 253
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 217, 261, 518
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 4 cut(s) 506, 605, 791, 820
CviAII CATG 5 cut(s) 30, 463, 493, 758, 887
CviQI GTAC 4 cut(s) 506, 605, 791, 820
DdeI CTNAG 7 cut(s) 153, 389, 483, 526, 848, 858, 903
DpnI GATC 4 cut(s) 7, 251, 611, 783
DpnII GATC 4 cut(s) 5, 249, 609, 781
EaeI YGGCCR 2 cut(s) 317, 321
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
EciI GGCGGA 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 217, 261
Eco53kI GAGCTC 1 cut(s) 385
Eco81I CCTNAGG 1 cut(s) 389
Eco88I CYCGRG 2 cut(s) 308, 794
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 219, 252
EcoRV GATATC 1 cut(s) 729
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 5 cut(s) 33, 466, 496, 761, 890
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 2 cut(s) 588, 793
FatI CATG 5 cut(s) 29, 462, 492, 757, 886
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 1 cut(s) 781
FokI GGATG 4 cut(s) 273, 427, 437, 578
FriOI GRGCYC 1 cut(s) 387
FseI GGCCGGCC 1 cut(s) 323
FspBI CTAG 2 cut(s) 357, 509
GlaI GCGC 1 cut(s) 885
HaeIII GGCC 3 cut(s) 319, 323, 519
HapII CCGG 2 cut(s) 320, 803
HhaI GCGC 1 cut(s) 886
Hin1II CATG 5 cut(s) 33, 466, 496, 761, 890
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 3 cut(s) 240, 797, 806
HpaII CCGG 2 cut(s) 320, 803
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 5 cut(s) 154, 249, 265, 529, 816
Hpy188III TCNNGA 6 cut(s) 53, 100, 446, 468, 623, 758
HpyAV CCTTC 5 cut(s) 415, 587, 821, 869, 874
HpyCH4IV ACGT 2 cut(s) 740, 754
HpyCH4V TGCA 5 cut(s) 119, 128, 228, 457, 556
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 125, 211, 347, 543, 859
HpyF3I CTNAG 7 cut(s) 153, 389, 483, 526, 848, 858, 903
HpySE526I ACGT 2 cut(s) 740, 754
Hsp92II CATG 5 cut(s) 33, 466, 496, 761, 890
HspAI GCGC 1 cut(s) 884
KpnI GGTACC 1 cut(s) 608
KroI GCCGGC 1 cut(s) 319
KroNI GCCGGC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 4 cut(s) 5, 249, 609, 781
LmnI GCTCC 4 cut(s) 202, 382, 390, 470
LweI GCATC 2 cut(s) 115, 415
MaeI CTAG 2 cut(s) 357, 509
MaeII ACGT 2 cut(s) 740, 754
MaeIII GTNAC 3 cut(s) 68, 568, 703
MalI GATC 4 cut(s) 7, 251, 611, 783
MboI GATC 4 cut(s) 5, 249, 609, 781
MboII GAAGA 1 cut(s) 572
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 3 cut(s) 618, 768, 910
MlyI GAGTC 2 cut(s) 806, 815
MmeI TCCRAC 3 cut(s) 288, 355, 625
MroNI GCCGGC 1 cut(s) 319
MseI TTAA 3 cut(s) 366, 894, 909
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 2 cut(s) 320, 803
MspR9I CCNGG 2 cut(s) 221, 254
MvaI CCWGG 2 cut(s) 221, 254
MwoI GCNNNNNNNGC 6 cut(s) 23, 125, 211, 347, 543, 859
NaeI GCCGGC 1 cut(s) 321
NdeI CATATG 1 cut(s) 864
NdeII GATC 4 cut(s) 5, 249, 609, 781
NgoMIV GCCGGC 1 cut(s) 319
NlaIII CATG 5 cut(s) 33, 466, 496, 761, 890
NlaIV GGNNCC 5 cut(s) 84, 159, 472, 538, 606
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 2 cut(s) 496, 890
PaeR7I CTCGAG 2 cut(s) 308, 794
PagI TCATGA 1 cut(s) 757
PdiI GCCGGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 240
PfoI TCCNGGA 1 cut(s) 252
PleI GAGTC 2 cut(s) 805, 814
PpsI GAGTC 2 cut(s) 805, 814
PshAI GACNNNNGTC 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 219, 252
PspGI CCWGG 2 cut(s) 219, 252
PspN4I GGNNCC 5 cut(s) 84, 159, 472, 538, 606
PspPI GGNCC 3 cut(s) 217, 261, 518
PspXI VCTCGAGB 2 cut(s) 308, 794
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 249
RigI GGCCGGCC 1 cut(s) 323
RsaI GTAC 4 cut(s) 507, 606, 792, 821
RsaNI GTAC 4 cut(s) 506, 605, 791, 820
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 366, 894, 909
Sau3AI GATC 4 cut(s) 5, 249, 609, 781
Sau96I GGNCC 3 cut(s) 217, 261, 518
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 2 cut(s) 806, 815
ScrFI CCNGG 2 cut(s) 221, 254
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 2 cut(s) 115, 415
SfcI CTRYAG 1 cut(s) 298
Sfr274I CTCGAG 2 cut(s) 308, 794
SinI GGWCC 2 cut(s) 217, 261
SlaI CTCGAG 2 cut(s) 308, 794
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 308, 794
SmoI CTYRAG 2 cut(s) 308, 794
Sse9I AATT 3 cut(s) 618, 768, 910
SsiI CCGC 1 cut(s) 15
SspMI CTAG 2 cut(s) 357, 509
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 219, 252
TaiI ACGT 2 cut(s) 743, 757
TaqI TCGA 3 cut(s) 168, 309, 795
TasI AATT 3 cut(s) 618, 768, 910
TatI WGTACW 2 cut(s) 505, 819
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 3 cut(s) 366, 894, 909
Tru9I TTAA 3 cut(s) 366, 894, 909
TscAI CASTG 1 cut(s) 491
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 120, 275
TspRI CASTG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 217, 261
XceI RCATGY 2 cut(s) 496, 890
XhoI CTCGAG 2 cut(s) 308, 794
XspI CTAG 2 cut(s) 357, 509
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.