Rh6AG015600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000451
Physical Location & Seq
Forward (+)
1585920 .. 1589974
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG015600.1

Sequence Viewer

Length: 492 bp
ATGAGTTTAAAGGCACCAAATGTGCAAGACATGTCAGGAATGAAGAAGACGAGCCAAAGAGTGCAGATGCGTCTCGTGATCTCTGTTCTGAGATTCCTAGCTATCATTGATTTTACTCTGCTTTCGAAAGGGCAGAAGGAGGAGCTTAACAAACTGGACCTGGCTTGCAAAGAATGGGGATTCTTTCAGGTGGTAAACCATGGAGTAGAAACACAGGTGTTGCAGGGAATGAAGGATGCTACTGCGAAATTCTTTGACCTTCCGTTAGAAGAGAAGAGCAAAATTAGTATGTCACTGGATGAGTTTCAAGGCTACGGGCAAGCCTATGCTGCTGCCGAAGGGCAGACCCTTGACTGGTCTGACACACTGTTTCTCAGTGTTTATCCATCTCATAGTAGAAACCTTGAGTTTGGCCAACATCACCAAAAGGATTCAAGGAAGCAATTGAGGCATATTCTACTGAAGTTAAAAGGATTGGAGAGGAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

8.97

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 35 - 132 2e-28 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 2 cut(s) 308, 435
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 3 cut(s) 101, 145, 486
AluI AGCT 3 cut(s) 101, 145, 486
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 2 cut(s) 329, 332
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 414
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 488
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 316, 319
BccI CCATC 1 cut(s) 394
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 98
BisI GCNGC 2 cut(s) 330, 333
BlsI GCNGC 2 cut(s) 331, 334
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 57, 226
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 1 cut(s) 470
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 159, 300, 359
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 241, 304
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 80, 388
BseNI ACTGG 3 cut(s) 159, 300, 359
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 316, 319
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 1 cut(s) 414
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 488
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 414
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 2 cut(s) 81, 387
BspLI GGNNCC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 13
BsrI ACTGG 3 cut(s) 159, 300, 359
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 369
Bst6I CTCTTC 2 cut(s) 264, 269
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 166, 321
BstDEI CTNAG 3 cut(s) 89, 374, 489
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 241, 304
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 329, 448
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 316, 319
BstV2I GAAGAC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 241, 304
BtsIMutI CAGTG 3 cut(s) 293, 365, 382
Cac8I GCNNGC 2 cut(s) 166, 321
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 59
CviAII CATG 2 cut(s) 31, 200
CviJI RGCY 8 cut(s) 54, 101, 145, 164, 312, 323, 414, 486
CviKI_1 RGCY 8 cut(s) 54, 101, 145, 164, 312, 323, 414, 486
DdeI CTNAG 3 cut(s) 89, 374, 489
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 264, 269
EarI CTCTTC 2 cut(s) 264, 269
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 488
ErhI CCWWGG 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 34, 203
FaiI YATR 6 cut(s) 32, 201, 290, 327, 393, 453
FatI CATG 2 cut(s) 30, 199
Fnu4HI GCNGC 2 cut(s) 330, 333
FokI GGATG 2 cut(s) 248, 311
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 330, 333
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 330, 333
HaeIII GGCC 1 cut(s) 414
HgaI GACGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 34, 203
HinfI GANTC 3 cut(s) 93, 180, 431
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 90, 361
Hpy188III TCNNGA 2 cut(s) 36, 76
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 4 cut(s) 130, 226, 269, 332
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 25, 64, 168, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 448
HpyF3I CTNAG 3 cut(s) 89, 374, 489
Hsp92II CATG 2 cut(s) 34, 203
Kzo9I GATC 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 142, 483
LpnPI CCDG 9 cut(s) 21, 140, 146, 173, 173, 200, 209, 281, 340
Lsp1109I GCAGC 2 cut(s) 316, 319
LweI GCATC 2 cut(s) 57, 226
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 291
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 4 cut(s) 55, 58, 281, 286
MfeI CAATTG 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 488
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 3 cut(s) 248, 282, 443
MluNI TGGCCA 1 cut(s) 414
MnlI CCTC 3 cut(s) 133, 441, 474
Mox20I TGGCCA 1 cut(s) 414
MscI TGGCCA 1 cut(s) 414
MseI TTAA 3 cut(s) 8, 147, 467
Msp20I TGGCCA 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 329, 448
NcoI CCATGG 1 cut(s) 199
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 34, 203
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 291
NspI RCATGY 1 cut(s) 34
NspV TTCGAA 1 cut(s) 125
PciI ACATGT 1 cut(s) 30
PciSI GCTCTTC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 93, 180, 431
PkrI GCNGC 2 cut(s) 331, 334
PscI ACATGT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 8, 147, 467
SatI GCNGC 2 cut(s) 330, 333
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 488
SetI ASST 8 cut(s) 103, 147, 162, 192, 219, 261, 405, 488
SfaNI GCATC 2 cut(s) 57, 226
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 3 cut(s) 248, 282, 443
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 248, 282, 443
TfiI GAWTC 3 cut(s) 93, 180, 431
Tru1I TTAA 3 cut(s) 8, 147, 467
Tru9I TTAA 3 cut(s) 8, 147, 467
TscAI CASTG 3 cut(s) 300, 372, 382
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 329, 332
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 56, 245
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 3 cut(s) 300, 372, 382
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.