Rw3G011880

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000451
Physical Location & Seq
Forward (+)
11745226 .. 11747189
1964 bp
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UTR
Exon/CDS
Intron
Rw3G011880.1

Sequence Viewer

Length: 1098 bp
ATGCGTTCAGGTACAGATGAAGGATTAGTTCAAGTAGAGGTTGCACCAACTTTTGCTCCATCTCTCCCAGTGCCAAATGTTCAAGAGATTGTGAGGACTGACCCTTTGCAGGTCCCCGAAAGATACCTTAGGGATCAAGAAGCGATTCCAGAGAATAAAGATCATACTACTTCTGACCTATCTACGGAGATTCCTATCATTGATTTTTCTCTTCTTTCGAAAGGGAACAAGGAGGAGCTTGACAAATTGGACATGGCTTGCCAAGAATGGGGATTCTTTCAGATAGTAAATCATGGAGTAGAAAAAGAAGTGTTGCTGGGCATGAAGGATGTTGCGGCCAAGTTTTTTGAGCTTCCTCTGGAAGAGAAGAATAAGGTTGCTATGCCTTCAGATGACATACAAGGCTACGGCCATGCCTATGTGGTTTCTGAAGACCAGATTCTGGATTGGTCTGATGCATTGATTCTCATCGTGTACCCAACTCATTATAGAAAGCTTCAGTTTTGGCCAGCAGTACCAGAGAAATTCAAAGAGGTTCTTGAGGCATATTCTAGTGAAGTTAAAAGAGTAGGAGAGGAGCTTCTAATGTCTCTATCGATACTCATGGGAATGGAGAAGGATTCTCTTATTGGCCTCCATAACCAGTTATTACAAGGTGTGAGGGTGAACTACTATCCTCCATGCTCCATGCCTCATAAAGTACTAGGACTGAGTCCACACTCGGACACGAGCACTATAACCATACTTATGCAAGAGGACGATGTCACCGGTTTGCAGATTCAGAAAGGAGGAGAATGGGTGTCAGTCGAGCCAATTCCAAACGCTCTTGTTGTGAATGTTGGAGATGTTCTTGAGATATGGACTAATGGGAAGTACAAGAGCATTGAGCACAGAGCTGTGACGACCAAAAACAAGGCGAGGTTATCCTATGCAACATTTCTTTTCCCACATGACGATGTGGAAGTTGAACCAATTTATGATATTGTGGAGTCACAGACGATGTACAAGAAAGTCAGATATGGAGATTATCTCAGACAGTCCATGAAGATGAAGCATGCGGGGAAGGCACACACTCAAATGGCGAAGATCGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

365

Amino Acids

41.36

Weight (kDa)

5.07

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 64 - 171 1.3e-29 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 220 - 316 2.5e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 442
AciI CCGC 2 cut(s) 335, 1058
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 3 cut(s) 336, 409, 506
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 3 cut(s) 372, 450, 482
AfaI GTAC 6 cut(s) 13, 476, 516, 702, 875, 1004
AfiI CCNNNNNNNGG 4 cut(s) 109, 184, 268, 442
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 4 cut(s) 32, 83, 529, 968
AluBI AGCT 6 cut(s) 238, 352, 496, 580, 896, 1095
AluI AGCT 6 cut(s) 238, 352, 496, 580, 896, 1095
Alw21I GWGCWC 2 cut(s) 734, 891
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 4 cut(s) 336, 409, 506, 631
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 676, 757
AsuII TTCGAA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 508
BauI CACGAG 1 cut(s) 727
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 734, 891
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 2 cut(s) 552, 704
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BmcAI AGTACT 1 cut(s) 702
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 1014, 1046
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 560, 872
Bsa29I ATCGAT 1 cut(s) 596
BsaBI GATNNNNATC 2 cut(s) 194, 467
BsaWI WCCGGW 1 cut(s) 767
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 783, 813
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 184, 268, 442
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 2 cut(s) 68, 643
Bse21I CCTNAGG 1 cut(s) 128
Bse8I GATNNNNATC 2 cut(s) 194, 467
BseCI ATCGAT 1 cut(s) 596
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 2 cut(s) 194, 467
BseLI CCNNNNNNNGG 4 cut(s) 109, 184, 268, 442
BseMII CTCAG 2 cut(s) 701, 1045
BseNI ACTGG 2 cut(s) 68, 643
BseRI GAGGAG 3 cut(s) 248, 590, 804
BseYI CCCAGC 1 cut(s) 316
BshFI GGCC 4 cut(s) 338, 411, 508, 633
BshTI ACCGGT 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 596
BsiHKAI GWGCWC 2 cut(s) 734, 891
BsiSI CCGG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 4 cut(s) 109, 184, 268, 442
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 4 cut(s) 338, 411, 508, 633
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 734, 891
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 3 cut(s) 133, 160, 1086
BspACI CCGC 2 cut(s) 335, 1058
BspANI GGCC 4 cut(s) 338, 411, 508, 633
BspCNI CTCAG 2 cut(s) 702, 1044
BspDI ATCGAT 1 cut(s) 596
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 767
BsrGI TGTACA 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 68, 643
BssAI RCCGGY 1 cut(s) 767
BssMI GATC 3 cut(s) 133, 160, 1086
BssSI CACGAG 1 cut(s) 727
Bst2BI CACGAG 1 cut(s) 727
Bst4CI ACNGT 1 cut(s) 1038
Bst6I CTCTTC 2 cut(s) 216, 357
BstAUI TGTACA 1 cut(s) 1002
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 259, 510, 1056
BstDEI CTNAG 3 cut(s) 128, 710, 1031
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 3 cut(s) 136, 163, 1089
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 3 cut(s) 133, 160, 1086
BstMWI GCNNNNNNNGC 1 cut(s) 1064
BstNSI RCATGY 1 cut(s) 1058
BstV2I GAAGAC 1 cut(s) 438
Bsu15I ATCGAT 1 cut(s) 596
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 4 cut(s) 338, 411, 508, 633
BsuTUI ATCGAT 1 cut(s) 596
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 3 cut(s) 259, 510, 1056
CaiI CAGNNNCTG 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 596
Csp6I GTAC 6 cut(s) 12, 475, 515, 701, 874, 1003
CspAI ACCGGT 1 cut(s) 767
CviQI GTAC 6 cut(s) 12, 475, 515, 701, 874, 1003
DdeI CTNAG 3 cut(s) 128, 710, 1031
DpnI GATC 3 cut(s) 135, 162, 1088
DpnII GATC 3 cut(s) 133, 160, 1086
EaeI YGGCCR 3 cut(s) 336, 409, 506
Eam1104I CTCTTC 2 cut(s) 216, 357
EarI CTCTTC 2 cut(s) 216, 357
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 372, 450, 482
Eco81I CCTNAGG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 460
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 1 cut(s) 98
FauI CCCGC 1 cut(s) 1051
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 2 cut(s) 552, 704
GluI GCNGC 1 cut(s) 336
GsaI CCCAGC 1 cut(s) 320
HaeIII GGCC 4 cut(s) 338, 411, 508, 633
HapII CCGG 1 cut(s) 768
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 9 cut(s) 145, 190, 273, 439, 463, 620, 712, 778, 989
HpaII CCGG 1 cut(s) 768
HphI GGTGA 2 cut(s) 676, 757
Hpy166II GTNNAC 3 cut(s) 475, 667, 716
Hpy188I TCNGA 9 cut(s) 175, 282, 391, 430, 454, 724, 783, 1016, 1034
Hpy188III TCNNGA 7 cut(s) 83, 137, 149, 359, 443, 539, 851
Hpy8I GTNNAC 3 cut(s) 475, 667, 716
HpyAV CCTTC 5 cut(s) 14, 319, 396, 610, 1057
HpyCH4III ACNGT 1 cut(s) 1038
HpyCH4V TGCA 6 cut(s) 44, 109, 458, 751, 775, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 1064
HpyF3I CTNAG 3 cut(s) 128, 710, 1031
Kzo9I GATC 3 cut(s) 133, 160, 1086
LmnI GCTCC 4 cut(s) 61, 235, 577, 689
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 552, 704
MaeIII GTNAC 3 cut(s) 763, 898, 990
MalI GATC 3 cut(s) 135, 162, 1088
MboI GATC 3 cut(s) 133, 160, 1086
MboII GAAGA 6 cut(s) 203, 374, 379, 443, 1057, 1096
MhlI GDGCHC 2 cut(s) 734, 891
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 4 cut(s) 245, 524, 813, 972
MluNI TGGCCA 1 cut(s) 508
MlyI GAGTC 2 cut(s) 721, 998
MmeI TCCRAC 1 cut(s) 820
Mox20I TGGCCA 1 cut(s) 508
Mph1103I ATGCAT 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 508
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 6 cut(s) 417, 608, 746, 954, 1046, 1076
Msp20I TGGCCA 1 cut(s) 508
MspI CCGG 1 cut(s) 768
MwoI GCNNNNNNNGC 1 cut(s) 1064
NdeII GATC 3 cut(s) 133, 160, 1086
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 3 cut(s) 763, 898, 990
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 1058
NspV TTCGAA 1 cut(s) 218
PaeI GCATGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 7 cut(s) 145, 190, 273, 439, 463, 620, 778
PflFI GACNNNGTC 2 cut(s) 711, 761
PflMI CCANNNNNTGG 1 cut(s) 442
PinAI ACCGGT 1 cut(s) 767
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 720, 997
PpsI GAGTC 2 cut(s) 720, 997
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 442
PsyI GACNNNGTC 2 cut(s) 711, 761
RsaI GTAC 6 cut(s) 13, 476, 516, 702, 875, 1004
RsaNI GTAC 6 cut(s) 12, 475, 515, 701, 874, 1003
RseI CAYNNNNRTG 6 cut(s) 417, 608, 746, 954, 1046, 1076
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 3 cut(s) 133, 160, 1086
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 702
SchI GAGTC 2 cut(s) 721, 998
SduI GDGCHC 2 cut(s) 734, 891
SfaNI GCATC 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 6 cut(s) 417, 608, 746, 954, 1046, 1076
SmlI CTYRAG 2 cut(s) 539, 851
SmoI CTYRAG 2 cut(s) 539, 851
SphI GCATGC 1 cut(s) 1058
Sse9I AATT 4 cut(s) 245, 524, 813, 972
SsiI CCGC 2 cut(s) 335, 1058
SspMI CTAG 2 cut(s) 552, 704
TaaI ACNGT 1 cut(s) 1038
TaqI TCGA 4 cut(s) 218, 596, 807, 1089
TasI AATT 4 cut(s) 245, 524, 813, 972
TatI WGTACW 3 cut(s) 700, 873, 1002
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 7 cut(s) 145, 190, 273, 439, 463, 620, 778
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 3 cut(s) 763, 898, 990
Tsp45I GTSAC 3 cut(s) 763, 898, 990
TspDTI ATGAA 4 cut(s) 33, 338, 1058, 1064
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 75
Tth111I GACNNNGTC 2 cut(s) 711, 761
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 524
XceI RCATGY 1 cut(s) 1058
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 552, 704
ZrmI AGTACT 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.