Rmu_sc0012177.1_g000002

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012177.1
OG0000451
Physical Location & Seq
Forward (+)
6532 .. 7127
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012177.1_g000002.1.cds

Sequence Viewer

Length: 507 bp
atggggatggagaaggatgttcttcttggactgcatcaagatttggcagcagcattgcgcataaactacattcctccatgctctatgcctgataaagtactaggtctaagtgcacatgcggatgcaggcaccattactgtacttatgcaagaagataatgttatcggattacagattcgaaaacaaggacaatgggtgtcagtcaagccgattccaaactctttggttgtgaatgttggagatgctcttgagatatggagcaacgggaagtacaaaagcattgaacacagagctgtgacaaacgaaagcaaggcaaggatgtcttatgcatcatttatctttccacatgtcgatgtggaaattgagccgttcgatcagatactggagtcatcagggaccattcagatgtataagaaggtcaaatatggagattatttgattcaatgcttgaagaggaaaatggaggggaaggaacacactcaaaatgcaaaattaggaagtacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

168

Amino Acids

18.73

Weight (kDa)

6.96

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 1 cut(s) 119
AfaI GTAC 4 cut(s) 99, 141, 272, 502
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 3 cut(s) 284, 443, 451
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 115
Alw44I GTGCAC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 47, 50
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 396
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 115
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanI GGYRCC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 59, 62
BceAI ACGGC 1 cut(s) 352
BfaI CTAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 48, 51
BlsI GCNGC 2 cut(s) 49, 52
BmcAI AGTACT 2 cut(s) 99, 502
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 130, 397
BmsI GCATC 4 cut(s) 43, 112, 232, 338
BpmI CTGGAG 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 53
BseGI GGATG 4 cut(s) 12, 22, 127, 324
BseMI GCAATG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 2 cut(s) 59, 62
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 409
Bsp119I TTCGAA 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 130, 397
BspT104I TTCGAA 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 53
BsrI ACTGG 1 cut(s) 387
BssMI GATC 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 4 cut(s) 12, 22, 127, 324
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstNSI RCATGY 2 cut(s) 119, 350
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 59, 62
BtsCI GGATG 4 cut(s) 12, 22, 127, 324
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 4 cut(s) 98, 140, 271, 501
CviAII CATG 3 cut(s) 78, 116, 347
CviJI RGCY 3 cut(s) 208, 293, 367
CviKI_1 RGCY 3 cut(s) 208, 293, 367
CviQI GTAC 4 cut(s) 98, 140, 271, 501
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 3 cut(s) 81, 119, 350
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 409
FatI CATG 3 cut(s) 77, 115, 346
Fnu4HI GCNGC 2 cut(s) 48, 51
FokI GGATG 4 cut(s) 19, 29, 134, 331
Fsp4HI GCNGC 2 cut(s) 48, 51
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 48, 51
GsuI CTGGAG 1 cut(s) 404
HhaI GCGC 1 cut(s) 60
Hin1II CATG 3 cut(s) 81, 119, 350
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 4 cut(s) 175, 211, 386, 439
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 167, 378, 405
Hpy188III TCNNGA 2 cut(s) 38, 248
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 7, 409, 463
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 6 cut(s) 34, 113, 125, 148, 329, 488
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 3 cut(s) 81, 119, 350
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 4 cut(s) 102, 111, 368, 378
Lsp1109I GCAGC 2 cut(s) 59, 62
LweI GCATC 4 cut(s) 43, 112, 232, 338
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 3 cut(s) 14, 164, 463
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 360, 491
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 3 cut(s) 84, 447, 457
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 1 cut(s) 505
MslI CAYNNNNRTG 3 cut(s) 120, 351, 404
NdeII GATC 1 cut(s) 373
NlaIII CATG 3 cut(s) 81, 119, 350
NlaIV GGNNCC 2 cut(s) 130, 397
NmuCI GTSAC 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 2 cut(s) 119, 350
NspV TTCGAA 1 cut(s) 178
PciI ACATGT 1 cut(s) 346
PfeI GAWTC 3 cut(s) 175, 211, 439
PkrI GCNGC 2 cut(s) 49, 52
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 130, 397
PspPI GGNCC 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 382
RsaI GTAC 4 cut(s) 99, 141, 272, 502
RsaNI GTAC 4 cut(s) 98, 140, 271, 501
RseI CAYNNNNRTG 3 cut(s) 120, 351, 404
SaqAI TTAA 1 cut(s) 505
SatI GCNGC 2 cut(s) 48, 51
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 2 cut(s) 99, 502
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 106, 295, 420
SfaNI GCATC 4 cut(s) 43, 112, 232, 338
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 3 cut(s) 120, 351, 404
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 360, 491
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 3 cut(s) 178, 351, 372
TasI AATT 2 cut(s) 360, 491
TatI WGTACW 4 cut(s) 97, 139, 270, 500
TfiI GAWTC 3 cut(s) 175, 211, 439
Tru1I TTAA 1 cut(s) 505
Tru9I TTAA 1 cut(s) 505
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 47, 50
Tsp45I GTSAC 1 cut(s) 295
VneI GTGCAC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 396
XceI RCATGY 2 cut(s) 119, 350
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 2 cut(s) 99, 502
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.