Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

12505214 .. 12507522

Gene Structure 2309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG147400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTGAATCATGGTGTGGCGACAGAATTGATGAAGGGCATGAAGGATTATGCGCAGAAGTTCTTTGAACTTCCATTAGAAGAAAAGAACAAAATTGCTATACCACCAAATGACATACAAGGCTATGGCCATTCCCATTCGGATCAGATCCTGGATTGGTCCGACAAACTTGTTCTTATCGTTCACCCACACCACTATAGAAAGCTCGAGGTCTGGCCGGCCACTCCATTCAAGGAGGCTATTGAGGCATATTCTAGTGAAGTTAAAAGAGTTGGAGAGGAGCTCTTAAGGTTTATGTCTTTGATCATGGGGATGGAGAAGGATGCTTTTCTTGGGCTACATCAAGAGTTGGTGCAACCCATGTCGGTAGCCTACTATCCTCAATGCTACTTGCCTGATAAAGTACTAGGACTTGGCCCTCACTCAGACAAAGGGACCATAGGCATACTTATGCAAGAAGACGATGTAACGGGACTACAAATCAAGCACGAAGGAAAATGGGTACCGATCAAGCCAATTCCCGACACTTTAGTAGTGAATGTTGGAGACATGATGGAGATATGGAGTAATGGGAAATACAAGAGTATTGAACACAGAGTTGTAACAAACGAAAGCAAGGCGAGGATATCTTGTTCAACGTTTTATTTACCACGTCATGATGTGGAAATTGAACCCCTTGATCAAATGGTACTCGAGTCGCCGGGGTCCCTTCCGATGTACAAAAAGGTCAAATATGGAGATTATCTGAGGCAAACTAAGCATATGAGATTTGAAGGGAAGGCGCATGTCATTAAGGTTGCTAAGCTTAATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

271

Amino Acids

31.11

Weight (kDa)

6.5

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 74	3.4e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	121 - 217	1.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	54
Acc65I	GGTACC	1 cut(s)	502
AccB1I	GGYRCC	1 cut(s)	502
AclI	AACGTT	1 cut(s)	638
AclWI	GGATC	2 cut(s)	142, 150
AcoI	YGGCCR	3 cut(s)	127, 215, 219
AfaI	GTAC	4 cut(s)	405, 504, 690, 719
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	6 cut(s)	68, 232, 590, 636, 671, 773
AjiI	CACGTC	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	616, 648
AluBI	AGCT	3 cut(s)	205, 283, 805
AluI	AGCT	3 cut(s)	205, 283, 805
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	142, 150
AlwNI	CAGNNNCTG	1 cut(s)	151
Ama87I	CYCGRG	2 cut(s)	206, 692
AoxI	GGCC	4 cut(s)	127, 215, 219, 415
Asp718I	GGTACC	1 cut(s)	502
AspLEI	GCGC	2 cut(s)	55, 784
AspS9I	GGNCC	4 cut(s)	159, 416, 435, 705
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	16, 176
AvaI	CYCGRG	2 cut(s)	206, 692
AvaII	GGWCC	3 cut(s)	159, 435, 705
BaeI	ACNNNNGTAYC	2 cut(s)	680, 713
BalI	TGGCCA	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	285
BccI	CCATC	2 cut(s)	307, 547
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	2 cut(s)	303, 679
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	2 cut(s)	255, 407
BfmI	CTRYAG	1 cut(s)	196
BfrI	CTTAAG	1 cut(s)	286
BlpI	GCTNAGC	1 cut(s)	801
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	2 cut(s)	152, 702
Bme18I	GGWCC	3 cut(s)	159, 435, 705
BmeT110I	CYCGRG	2 cut(s)	206, 692
BmgBI	CACGTC	1 cut(s)	653
BmgT120I	GGNCC	4 cut(s)	159, 416, 435, 705
BmiI	GGNNCC	4 cut(s)	436, 504, 706, 707
BmrFI	CCNGG	2 cut(s)	152, 702
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
Bpu1102I	GCTNAGC	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	702
BsaJI	CCNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	2 cut(s)	318, 328
BseMII	CTCAG	2 cut(s)	438, 737
BseRI	GAGGAG	1 cut(s)	293
BshFI	GGCC	4 cut(s)	129, 217, 221, 417
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	2 cut(s)	206, 692
BsiSI	CCGG	2 cut(s)	218, 701
BslFI	GGGAC	3 cut(s)	448, 486, 691
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	3 cut(s)	448, 486, 691
BsnI	GGCC	4 cut(s)	129, 217, 221, 417
BsoBI	CYCGRG	2 cut(s)	206, 692
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	5 cut(s)	142, 147, 303, 507, 679
Bsp1720I	GCTNAGC	1 cut(s)	801
BspANI	GGCC	4 cut(s)	129, 217, 221, 417
BspCNI	CTCAG	2 cut(s)	437, 738
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	4 cut(s)	436, 504, 706, 707
BspPI	GGATC	2 cut(s)	142, 150
BspT107I	GGYRCC	1 cut(s)	502
BspTI	CTTAAG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	717
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	5 cut(s)	142, 147, 303, 507, 679
Bst2UI	CCWGG	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	286
BstAUI	TGTACA	1 cut(s)	717
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	4 cut(s)	424, 746, 756, 801
BstF5I	GGATG	2 cut(s)	318, 328
BstHHI	GCGC	2 cut(s)	55, 784
BstKTI	GATC	5 cut(s)	145, 150, 306, 510, 682
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	5 cut(s)	142, 147, 303, 507, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 757
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	2 cut(s)	150, 700
BstSFI	CTRYAG	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	4 cut(s)	129, 217, 221, 417
BtrI	CACGTC	1 cut(s)	653
BtsCI	GGATG	2 cut(s)	318, 328
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	151
CciI	TCATGA	1 cut(s)	655
CfoI	GCGC	2 cut(s)	55, 784
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	159, 416, 435, 705
Csp6I	GTAC	4 cut(s)	404, 503, 689, 718
CviAII	CATG	7 cut(s)	11, 40, 307, 361, 550, 656, 785
CviQI	GTAC	4 cut(s)	404, 503, 689, 718
DdeI	CTNAG	4 cut(s)	424, 746, 756, 801
DpnI	GATC	5 cut(s)	144, 149, 305, 509, 681
DpnII	GATC	5 cut(s)	142, 147, 303, 507, 679
EaeI	YGGCCR	3 cut(s)	127, 215, 219
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	3 cut(s)	159, 435, 705
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	2 cut(s)	206, 692
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	7 cut(s)	14, 43, 310, 364, 553, 659, 788
FaqI	GGGAC	3 cut(s)	448, 486, 691
FatI	CATG	7 cut(s)	10, 39, 306, 360, 549, 655, 784
FauNDI	CATATG	1 cut(s)	762
FbaI	TGATCA	2 cut(s)	303, 679
FokI	GGATG	2 cut(s)	325, 335
FriOI	GRGCYC	1 cut(s)	285
FseI	GGCCGGCC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	255, 407
FspI	TGCGCA	1 cut(s)	54
GlaI	GCGC	2 cut(s)	54, 783
HaeIII	GGCC	4 cut(s)	129, 217, 221, 417
HapII	CCGG	2 cut(s)	218, 701
HhaI	GCGC	2 cut(s)	55, 784
Hin1II	CATG	7 cut(s)	14, 43, 310, 364, 553, 659, 788
Hin6I	GCGC	2 cut(s)	53, 782
HinP1I	GCGC	2 cut(s)	53, 782
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	2 cut(s)	7, 695
HpaII	CCGG	2 cut(s)	218, 701
HphI	GGTGA	2 cut(s)	16, 176
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	6 cut(s)	142, 147, 163, 427, 714, 747
Hpy188III	TCNNGA	3 cut(s)	344, 521, 656
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	7 cut(s)	28, 37, 313, 485, 719, 767, 772
HpyCH4IV	ACGT	2 cut(s)	638, 652
HpyCH4V	TGCA	2 cut(s)	355, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 757
HpyF3I	CTNAG	4 cut(s)	424, 746, 756, 801
HpySE526I	ACGT	2 cut(s)	638, 652
Hsp92II	CATG	7 cut(s)	14, 43, 310, 364, 553, 659, 788
HspAI	GCGC	2 cut(s)	53, 782
KflI	GGGWCCC	1 cut(s)	705
KpnI	GGTACC	1 cut(s)	506
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Ksp22I	TGATCA	2 cut(s)	303, 679
Kzo9I	GATC	5 cut(s)	142, 147, 303, 507, 679
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	6 cut(s)	137, 164, 199, 231, 408, 714
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	255, 407
MaeII	ACGT	2 cut(s)	638, 652
MaeIII	GTNAC	2 cut(s)	466, 601
MalI	GATC	5 cut(s)	144, 149, 305, 509, 681
MboI	GATC	5 cut(s)	142, 147, 303, 507, 679
MboII	GAAGA	2 cut(s)	92, 470
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	5 cut(s)	26, 93, 516, 666, 808
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	3 cut(s)	186, 253, 523
MnlI	CCTC	8 cut(s)	202, 229, 238, 271, 390, 429, 615, 741
Mox20I	TGGCCA	1 cut(s)	129
MroNI	GCCGGC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	4 cut(s)	264, 287, 792, 807
MslI	CAYNNNNRTG	2 cut(s)	311, 449
Msp20I	TGGCCA	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	286
MspI	CCGG	2 cut(s)	218, 701
MspR9I	CCNGG	2 cut(s)	152, 702
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	245, 757
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	702
NdeI	CATATG	1 cut(s)	762
NdeII	GATC	5 cut(s)	142, 147, 303, 507, 679
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	7 cut(s)	14, 43, 310, 364, 553, 659, 788
NlaIV	GGNNCC	4 cut(s)	436, 504, 706, 707
NsbI	TGCGCA	1 cut(s)	54
NspI	RCATGY	1 cut(s)	788
PaeR7I	CTCGAG	2 cut(s)	206, 692
PagI	TCATGA	1 cut(s)	655
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	150
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	705
Psp124BI	GAGCTC	1 cut(s)	285
Psp1406I	AACGTT	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	4 cut(s)	436, 504, 706, 707
PspPI	GGNCC	4 cut(s)	159, 416, 435, 705
PspPPI	RGGWCCY	1 cut(s)	705
PspXI	VCTCGAGB	2 cut(s)	206, 692
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	147
RigI	GGCCGGCC	1 cut(s)	221
RsaI	GTAC	4 cut(s)	405, 504, 690, 719
RsaNI	GTAC	4 cut(s)	404, 503, 689, 718
RseI	CAYNNNNRTG	2 cut(s)	311, 449
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	264, 287, 792, 807
Sau3AI	GATC	5 cut(s)	142, 147, 303, 507, 679
Sau96I	GGNCC	4 cut(s)	159, 416, 435, 705
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	2 cut(s)	152, 702
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	207, 213, 285, 293, 641, 655, 729, 798, 807
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	196
Sfr274I	CTCGAG	2 cut(s)	206, 692
SinI	GGWCC	3 cut(s)	159, 435, 705
SlaI	CTCGAG	2 cut(s)	206, 692
SmiMI	CAYNNNNRTG	2 cut(s)	311, 449
SmlI	CTYRAG	3 cut(s)	206, 286, 692
SmoI	CTYRAG	3 cut(s)	206, 286, 692
Sse9I	AATT	5 cut(s)	26, 93, 516, 666, 808
SspMI	CTAG	2 cut(s)	255, 407
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	150, 700
TaiI	ACGT	2 cut(s)	641, 655
TaqI	TCGA	2 cut(s)	207, 693
TasI	AATT	5 cut(s)	26, 93, 516, 666, 808
TatI	WGTACW	2 cut(s)	403, 717
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	4 cut(s)	264, 287, 792, 807
Tru9I	TTAA	4 cut(s)	264, 287, 792, 807
TspDTI	ATGAA	2 cut(s)	47, 56
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	159, 435, 705
XceI	RCATGY	1 cut(s)	788
XhoI	CTCGAG	2 cut(s)	206, 692
XspI	CTAG	2 cut(s)	255, 407
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.