Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000350.1

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

2226 .. 3042

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000350.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgagtttaaacacagatgtggcgtttgtgcaggaggataaggattctgggagtttttcccagaaaccacatagatcatctcttcggccggtaccaaatgttcaagaactggtaaggaatgatcctttacaggttcccaaaagatatattaggaacgaagaagacatgccgaaggaagcggatctttgtcatcatctttcttctgagattcctatcattgatgtttctttgctctccaaaggggacaacgaggagcttcgcaaactcgacctggcttgcaaagaatggggattctttgtgatgataaatcatggagtggaaacagaagtaatgcagggcatcaaggatgctgcggacaagttctttgaacttccaatagaagagaagaattttattgctgtgccatcagctcagagacaaggctatggttttaaccaagcaatttctgaggagaagattttggattggtctgacagaattcttctcgggctttacccatatcgacatagaaagcctgaggtttggccaccgacaccactcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

181

Amino Acids

20.86

Weight (kDa)

5.29

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	91
AciI	CCGC	2 cut(s)	179, 353
AclWI	GGATC	2 cut(s)	116, 189
AcoI	YGGCCR	2 cut(s)	86, 524
AcsI	RAATTY	2 cut(s)	388, 477
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	104, 368
AjnI	CCWGG	1 cut(s)	270
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	2 cut(s)	256, 410
AluI	AGCT	2 cut(s)	256, 410
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	116, 189
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	2 cut(s)	86, 524
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	388, 477
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
Asp718I	GGTACC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	93, 135
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	337, 348
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	524
BsaBI	GATNNNNATC	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	212
BseMII	CTCAG	4 cut(s)	195, 425, 438, 507
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	266, 464
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	337
BsgI	GTGCAG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	88, 526
BshNI	GGYRCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	88, 526
BsoBI	CYCGRG	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	74, 121, 181
BspACI	CCGC	2 cut(s)	179, 353
BspANI	GGCC	2 cut(s)	88, 526
BspCNI	CTCAG	4 cut(s)	196, 424, 439, 508
BspLI	GGNNCC	2 cut(s)	93, 135
BspPI	GGATC	2 cut(s)	116, 189
BspT107I	GGYRCC	1 cut(s)	91
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	3 cut(s)	74, 121, 181
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	87, 375
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	4 cut(s)	204, 411, 447, 516
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	3 cut(s)	77, 124, 184
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	74, 121, 181
BstMCI	CGRYCG	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	2 cut(s)	88, 526
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	2 cut(s)	166, 311
CviJI	RGCY	8 cut(s)	88, 256, 275, 410, 423, 490, 514, 526
CviKI_1	RGCY	8 cut(s)	88, 256, 275, 410, 423, 490, 514, 526
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	4 cut(s)	204, 411, 447, 516
DpnI	GATC	3 cut(s)	76, 123, 183
DpnII	GATC	3 cut(s)	74, 121, 181
DraI	TTTAAA	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	86, 524
EagI	CGGCCG	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	87, 375
EarI	CTCTTC	2 cut(s)	87, 375
EclXI	CGGCCG	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	169, 314
FaiI	YATR	7 cut(s)	72, 147, 167, 312, 426, 499, 507
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	165, 310
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	88, 526
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	2 cut(s)	169, 314
HinfI	GANTC	3 cut(s)	44, 208, 291
HpaII	CCGG	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	205, 414, 448, 472
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	31, 279, 334
HpyF3I	CTNAG	4 cut(s)	204, 411, 447, 516
Hsp92II	CATG	2 cut(s)	169, 314
KpnI	GGTACC	1 cut(s)	95
Kzo9I	GATC	3 cut(s)	74, 121, 181
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	337, 348
MalI	GATC	3 cut(s)	76, 123, 183
MboI	GATC	3 cut(s)	74, 121, 181
MboII	GAAGA	8 cut(s)	74, 170, 173, 192, 392, 397, 466, 473
MflI	RGATCY	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	3 cut(s)	388, 441, 477
MluNI	TGGCCA	1 cut(s)	526
MnlI	CCTC	4 cut(s)	28, 244, 442, 511
Mox20I	TGGCCA	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	526
MseI	TTAA	2 cut(s)	8, 432
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	526
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	272
MssI	GTTTAAAC	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	74, 121, 181
NlaIII	CATG	2 cut(s)	169, 314
NlaIV	GGNNCC	2 cut(s)	93, 135
NspI	RCATGY	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	44, 208, 291
PkrI	GCNGC	1 cut(s)	352
PmeI	GTTTAAAC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	93, 135
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	8, 432
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	74, 121, 181
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	5 cut(s)	135, 258, 273, 412, 522
SfaNI	GCATC	2 cut(s)	337, 348
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	388, 441, 477
SsiI	CCGC	2 cut(s)	179, 353
StyD4I	CCNGG	1 cut(s)	270
TaqI	TCGA	2 cut(s)	267, 502
TasI	AATT	3 cut(s)	388, 441, 477
TfiI	GAWTC	3 cut(s)	44, 208, 291
Tru1I	TTAA	2 cut(s)	8, 432
Tru9I	TTAA	2 cut(s)	8, 432
TseI	GCWGC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	388, 477
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.