Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

40285573 .. 40286158

Gene Structure 586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTTGGGGAGGCTGTTCAAGCCATAAGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTTGTTTTAGGCCTAAGCCCACATTCAGATGGGAGTGCCCTGACAGTTCTGCAGCAAGGGAAGGACAACTCAGTAGGACTTCAAATCCTCAAAGATGACAGATGGGTACCTGTTCAGCCTATTCCCAATGCTCTTGTGATCAACATTGGGGACACCATAGAAGTTCTTACAAATGGGATCTATAAGAGTGTGGAGCATAGAGCAGTGACTCACAAGGTGAAAGATAGGCTTTCAATCGTCACATTTTATGCTCCTAGCTATGAGGTAGAGCTTGGACCTGTGCAAGAACTGCTGGATGAAAACACTCCATGCAAGTATAGAAGATACAATCATGGAGAGTACAGCAAACACTATGTTACAAACAAGTTGCAAGGGAAAAAAACACTCGAGTTTGCCAAGATTCAAAGCAGAAGTTCAAACCAGGAAGAACCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

6.96

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	7 - 106	4.2e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	171, 404
AgsI	TTSAA	6 cut(s)	20, 54, 146, 297, 467, 480
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	2 cut(s)	321, 334
AluI	AGCT	2 cut(s)	321, 334
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	86, 159
BciT130I	CCWGG	1 cut(s)	485
BclI	TGATCA	1 cut(s)	201
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	485
BseGI	GGATG	2 cut(s)	36, 364
BseMII	CTCAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	201, 240
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	169
BssMI	GATC	2 cut(s)	201, 240
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	77, 133
BstF5I	GGATG	2 cut(s)	36, 364
BstKTI	GATC	2 cut(s)	204, 243
BstMBI	GATC	2 cut(s)	201, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 352
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	36, 364
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	170, 403
CviAII	CATG	4 cut(s)	48, 372, 395, 496
CviJI	RGCY	8 cut(s)	14, 23, 75, 81, 181, 292, 321, 334
CviKI_1	RGCY	8 cut(s)	14, 23, 75, 81, 181, 292, 321, 334
CviQI	GTAC	2 cut(s)	170, 403
DdeI	CTNAG	2 cut(s)	77, 133
DpnI	GATC	2 cut(s)	203, 242
DpnII	GATC	2 cut(s)	201, 240
DraIII	CACNNNGTG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	51, 375, 398, 499
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	47, 371, 394, 495
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	2 cut(s)	43, 371
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	75
Hin1II	CATG	4 cut(s)	51, 375, 398, 499
HinfI	GANTC	2 cut(s)	271, 463
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	115, 346, 375, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 352
HpyF3I	CTNAG	2 cut(s)	77, 133
Hsp92II	CATG	4 cut(s)	51, 375, 398, 499
KpnI	GGTACC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	201, 240
LmnI	GCTCC	2 cut(s)	256, 319
LpnPI	CCDG	7 cut(s)	72, 116, 186, 341, 354, 470, 497
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	268, 301, 418
MalI	GATC	2 cut(s)	203, 242
MboI	GATC	2 cut(s)	201, 240
MboII	GAAGA	2 cut(s)	396, 500
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	4, 54, 161, 319
MslI	CAYNNNNRTG	2 cut(s)	29, 90
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	20, 352
NdeII	GATC	2 cut(s)	201, 240
NlaIII	CATG	4 cut(s)	51, 375, 398, 499
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	268, 301
PaeR7I	CTCGAG	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	338
PspXI	VCTCGAGB	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	2 cut(s)	171, 404
RsaNI	GTAC	2 cut(s)	170, 403
RseI	CAYNNNNRTG	2 cut(s)	29, 90
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	201, 240
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	8 cut(s)	61, 66, 175, 282, 323, 330, 336, 343
SfcI	CTRYAG	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	29, 90
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SseBI	AGGCCT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	450
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	463
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	268, 301
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	2 cut(s)	268, 301
TspDTI	ATGAA	2 cut(s)	47, 375
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	449
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.