FvH4_6g13290

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000451
Physical Location & Seq
Forward (+)
8087730 .. 8096331
8602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13290.t2

Sequence Viewer

Length: 1095 bp
ATGAGCAGCCTTGATATAGCATCTCAGCTGCCGGTAGAACCAAACGTTCAAGAACTGGTCAGGAGTAACCCATTAAAGATCCCTGAGAAGTACCTTTTAAAGAATATATATGAACAAGACAAGCCAAAGAGTATAGCTACTACTTGTGATGATCTTTCTTCTGATGATATCCCCATCGTCGATTTTTCTCTGCTCGCAAGTGGGAACGAGGAGGAGCTTAACAAACTGGATCTGGCTTGCAAGGAATGGGGATTCTTCCAGCTCGTAAATCATGGACTGGCAAGAGAAGTGTTGCAGGGCATGAAGGATGGTTCTGCGAAGTTCTTTGAACTTCCTATAGAAGAGAAGAACAAATTTTCCATGTCAACAGCAAAAGAAATACGTGAAGGCTATGGGCAAGCCGCTGTGGCTACTGAAGAGCAGACACTCGACTGGTCCGACGCACTGGTTCTCAAGCTTTACCCATCCCAGATGAGGAACCTTGAGTATTGGCCAACCACACCAAAGGGATACAAGGAGGCTATTGAGGCATATGCTAGTGAAGTTAAGAGAGTTGGAGAGGAGATCCTAAGATCTCTATCTTTAACAATGGGAATGGAGAAGGATGTTCTTCTTGGACTGCATCAAGATTTGGCGGCAGCATTGCGTGTAAACTACATTCCTCCATGCTCCATGCCTGATCAAGTGCTAGGTCTAAGTGCACATGCGGATGCAAGCACCATTACTATACTTATGCAAGACGATAATGTTATCGGATTACAGATTCGAAAACAAGGACAATGGGTATCAGTCAAACCAATTCCAAACTCTTTCGTTGTGAATGTTGGAGATGCTCTTGAGATATGGAGCAACGGGAAGTACAAAAGCATTGAACACAGAGCCGTGACAAACGAAAGCAAGGCAAGAATGTCTTATGCATCGTTTATCTTTCCACATGTTGATGTGGAAATTGAACCGTTCCATCATCTACTAGAGTCATCAGGCACCATTCAGATGTACAAGAAGGTCAAATATGGAGATTATTTGATTAAATGCTTGAAGAGGAAAATGGAAGGGAAGGAACACACTCAAAATGCAAAAATAGGAAGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

365

Amino Acids

40.87

Weight (kDa)

5.43

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 57 - 166 3.2e-26 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 214 - 311 3.6e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 983
AciI CCGC 3 cut(s) 402, 635, 707
AclI AACGTT 1 cut(s) 45
AclWI GGATC 3 cut(s) 73, 237, 559
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 3 cut(s) 92, 860, 998
AfeI AGCGCT 1 cut(s) 1090
AfiI CCNNNNNNNGG 1 cut(s) 474
AflIII ACRYGT 1 cut(s) 934
AgsI TTSAA 5 cut(s) 50, 329, 872, 953, 1039
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 5 cut(s) 28, 137, 217, 262, 457
AluI AGCT 5 cut(s) 28, 137, 217, 262, 457
Alw21I GWGCWC 1 cut(s) 703
Alw44I GTGCAC 1 cut(s) 699
AlwI GGATC 3 cut(s) 73, 237, 559
Aor51HI AGCGCT 1 cut(s) 1090
AoxI GGCC 1 cut(s) 491
ApaLI GTGCAC 1 cut(s) 699
ApeKI GCWGC 3 cut(s) 6, 28, 638
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 1 cut(s) 1091
AspS9I GGNCC 1 cut(s) 435
AsuII TTCGAA 1 cut(s) 766
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 703
BalI TGGCCA 1 cut(s) 493
BanI GGYRCC 1 cut(s) 983
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 3 cut(s) 15, 18, 650
BccI CCATC 4 cut(s) 182, 302, 472, 969
BceAI ACGGC 1 cut(s) 866
BciVI GTATCC 1 cut(s) 503
BclI TGATCA 1 cut(s) 679
BfaI CTAG 3 cut(s) 537, 689, 971
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 1092
BfuI GTATCC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 407
BglII AGATCT 1 cut(s) 572
BisI GCNGC 5 cut(s) 7, 29, 402, 636, 639
BlsI GCNGC 5 cut(s) 8, 30, 403, 637, 640
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 479, 985
BmsI GCATC 5 cut(s) 29, 631, 700, 820, 926
Bpu14I TTCGAA 1 cut(s) 766
BpuEI CTTGAG 3 cut(s) 437, 503, 857
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 577
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 5 cut(s) 60, 231, 282, 437, 450
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 577
BseGI GGATG 4 cut(s) 313, 464, 610, 715
BseJI GATNNNNATC 1 cut(s) 577
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 38, 75
BseNI ACTGG 5 cut(s) 60, 231, 282, 437, 450
BseRI GAGGAG 3 cut(s) 224, 227, 575
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 3 cut(s) 15, 18, 650
BshFI GGCC 1 cut(s) 493
BshNI GGYRCC 1 cut(s) 983
BsiHKAI GWGCWC 1 cut(s) 703
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 474
BsnI GGCC 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 766
Bsp1286I GDGCHC 1 cut(s) 703
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 6 cut(s) 78, 151, 229, 564, 572, 679
BspACI CCGC 3 cut(s) 402, 635, 707
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 2 cut(s) 37, 76
BspLI GGNNCC 2 cut(s) 479, 985
BspPI GGATC 3 cut(s) 73, 237, 559
BspQI GCTCTTC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 766
BspT107I GGYRCC 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 641
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 5 cut(s) 60, 231, 282, 437, 450
BssAI RCCGGY 1 cut(s) 31
BssMI GATC 6 cut(s) 78, 151, 229, 564, 572, 679
Bst4CI ACNGT 1 cut(s) 957
Bst6I CTCTTC 3 cut(s) 336, 411, 1034
BstAUI TGTACA 1 cut(s) 996
BstBAI YACGTR 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 766
BstC8I GCNNGC 4 cut(s) 195, 238, 399, 715
BstDEI CTNAG 4 cut(s) 24, 84, 569, 695
BstF5I GGATG 4 cut(s) 313, 464, 610, 715
BstH2I RGCGCY 1 cut(s) 1092
BstHHI GCGC 1 cut(s) 1091
BstKTI GATC 6 cut(s) 81, 154, 232, 567, 575, 682
BstMBI GATC 6 cut(s) 78, 151, 229, 564, 572, 679
BstMWI GCNNNNNNNGC 2 cut(s) 407, 527
BstNSI RCATGY 2 cut(s) 707, 938
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 3 cut(s) 15, 18, 650
BstX2I RGATCY 4 cut(s) 78, 229, 564, 572
BstYI RGATCY 4 cut(s) 78, 229, 564, 572
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 1 cut(s) 493
BtsCI GGATG 4 cut(s) 313, 464, 610, 715
BtsIMutI CAGTG 1 cut(s) 443
Cac8I GCNNGC 4 cut(s) 195, 238, 399, 715
CfoI GCGC 1 cut(s) 1091
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 91, 859, 997
CviAII CATG 7 cut(s) 272, 301, 361, 666, 673, 704, 935
CviQI GTAC 3 cut(s) 91, 859, 997
DdeI CTNAG 4 cut(s) 24, 84, 569, 695
DpnI GATC 6 cut(s) 80, 153, 231, 566, 574, 681
DpnII GATC 6 cut(s) 78, 151, 229, 564, 572, 679
DraI TTTAAA 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 3 cut(s) 336, 411, 1034
EarI CTCTTC 3 cut(s) 336, 411, 1034
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 435
Eco47III AGCGCT 1 cut(s) 1090
Eco57I CTGAAG 1 cut(s) 435
EcoRV GATATC 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 919
FaeI CATG 7 cut(s) 275, 304, 364, 669, 676, 707, 938
FalI AAGNNNNNCTT 2 cut(s) 895, 927
FatI CATG 7 cut(s) 271, 300, 360, 665, 672, 703, 934
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 5 cut(s) 7, 29, 402, 636, 639
FokI GGATG 4 cut(s) 320, 451, 617, 722
Fsp4HI GCNGC 5 cut(s) 7, 29, 402, 636, 639
FspBI CTAG 3 cut(s) 537, 689, 971
GlaI GCGC 1 cut(s) 1090
GluI GCNGC 5 cut(s) 7, 29, 402, 636, 639
HaeII RGCGCY 1 cut(s) 1092
HaeIII GGCC 1 cut(s) 493
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 1091
Hin1II CATG 7 cut(s) 275, 304, 364, 669, 676, 707, 938
Hin6I GCGC 1 cut(s) 1089
HinP1I GCGC 1 cut(s) 1089
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 252, 763, 974
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 3 cut(s) 366, 652, 701
Hpy188I TCNGA 4 cut(s) 163, 439, 755, 993
Hpy188III TCNNGA 4 cut(s) 50, 61, 626, 836
Hpy8I GTNNAC 3 cut(s) 366, 652, 701
Hpy99I CGWCG 2 cut(s) 182, 443
HpyAV CCTTC 6 cut(s) 298, 380, 595, 997, 1046, 1051
HpyCH4III ACNGT 1 cut(s) 957
HpyCH4IV ACGT 2 cut(s) 45, 382
HpyCH4V TGCA 8 cut(s) 240, 295, 622, 701, 713, 736, 917, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 527
HpyF3I CTNAG 4 cut(s) 24, 84, 569, 695
HpySE526I ACGT 2 cut(s) 45, 382
Hsp92II CATG 7 cut(s) 275, 304, 364, 669, 676, 707, 938
HspAI GCGC 1 cut(s) 1089
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 6 cut(s) 78, 151, 229, 564, 572, 679
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 214, 674, 846
Lsp1109I GCAGC 3 cut(s) 15, 18, 650
LweI GCATC 5 cut(s) 29, 631, 700, 820, 926
MaeI CTAG 3 cut(s) 537, 689, 971
MaeII ACGT 2 cut(s) 45, 382
MaeIII GTNAC 2 cut(s) 65, 883
MalI GATC 6 cut(s) 80, 153, 231, 566, 574, 681
MboI GATC 6 cut(s) 78, 151, 229, 564, 572, 679
MboII GAAGA 7 cut(s) 150, 247, 353, 358, 428, 602, 1051
MflI RGATCY 4 cut(s) 78, 229, 564, 572
MhlI GDGCHC 1 cut(s) 703
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 3 cut(s) 353, 798, 948
MluNI TGGCCA 1 cut(s) 493
MlyI GAGTC 1 cut(s) 983
MmeI TCCRAC 3 cut(s) 462, 535, 805
MnlI CCTC 8 cut(s) 202, 205, 468, 511, 520, 553, 672, 1035
Mox20I TGGCCA 1 cut(s) 493
Mph1103I ATGCAT 1 cut(s) 919
MscI TGGCCA 1 cut(s) 493
MseI TTAA 6 cut(s) 74, 98, 219, 546, 584, 1029
MslI CAYNNNNRTG 3 cut(s) 708, 939, 992
Msp20I TGGCCA 1 cut(s) 493
MspA1I CMGCKG 2 cut(s) 28, 404
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 407, 527
NdeI CATATG 1 cut(s) 532
NdeII GATC 6 cut(s) 78, 151, 229, 564, 572, 679
NlaIII CATG 7 cut(s) 275, 304, 364, 669, 676, 707, 938
NlaIV GGNNCC 2 cut(s) 479, 985
NmuCI GTSAC 1 cut(s) 883
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 2 cut(s) 707, 938
NspV TTCGAA 1 cut(s) 766
PciI ACATGT 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PfeI GAWTC 2 cut(s) 252, 763
PkrI GCNGC 5 cut(s) 8, 30, 403, 637, 640
PleI GAGTC 1 cut(s) 982
PpsI GAGTC 1 cut(s) 982
Ppu21I YACGTR 1 cut(s) 383
PscI ACATGT 1 cut(s) 934
Psp1406I AACGTT 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 479, 985
PspPI GGNCC 1 cut(s) 435
PsuI RGATCY 4 cut(s) 78, 229, 564, 572
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 3 cut(s) 92, 860, 998
RsaNI GTAC 3 cut(s) 91, 859, 997
RseI CAYNNNNRTG 3 cut(s) 708, 939, 992
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 6 cut(s) 74, 98, 219, 546, 584, 1029
SatI GCNGC 5 cut(s) 7, 29, 402, 636, 639
Sau3AI GATC 6 cut(s) 78, 151, 229, 564, 572, 679
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 1 cut(s) 983
SduI GDGCHC 1 cut(s) 703
SfaNI GCATC 5 cut(s) 29, 631, 700, 820, 926
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 766
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 3 cut(s) 708, 939, 992
SmlI CTYRAG 3 cut(s) 452, 482, 836
SmoI CTYRAG 3 cut(s) 452, 482, 836
Sse9I AATT 3 cut(s) 353, 798, 948
SsiI CCGC 3 cut(s) 402, 635, 707
SspMI CTAG 3 cut(s) 537, 689, 971
TaaI ACNGT 1 cut(s) 957
TaiI ACGT 2 cut(s) 48, 385
TaqI TCGA 3 cut(s) 180, 429, 766
TasI AATT 3 cut(s) 353, 798, 948
TatI WGTACW 2 cut(s) 858, 996
TauI GCSGC 2 cut(s) 404, 638
TfiI GAWTC 2 cut(s) 252, 763
Tru1I TTAA 6 cut(s) 74, 98, 219, 546, 584, 1029
Tru9I TTAA 6 cut(s) 74, 98, 219, 546, 584, 1029
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 883
TseI GCWGC 3 cut(s) 6, 28, 638
Tsp45I GTSAC 1 cut(s) 883
TspDTI ATGAA 2 cut(s) 126, 317
TspRI CASTG 1 cut(s) 450
VneI GTGCAC 1 cut(s) 699
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 1 cut(s) 353
XceI RCATGY 2 cut(s) 707, 938
XspI CTAG 3 cut(s) 537, 689, 971
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.