Rmu_sc0002249.1_g000004

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002249.1
OG0000451
Physical Location & Seq
Reverse (-)
7203 .. 8113
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002249.1_g000004.1.cds

Sequence Viewer

Length: 384 bp
atgcctgatgcgtttactgatatcgtaaaagtgacgagatcacatataccagctgcaaatgtgcctgcaaggttagaaatccccaacaagaggcacagtgcctcagatagaggcactacaatagcactcagtggaggtgtggttgaggccgtggctccccaaggaagagggggaggtcacttggcgaggatctcttatgcaacctattatttagcacatccaaatgcggaaattgaacccctttatcaaatggttctcaagtcaccggggtcccttccgttgaaatttaagaaagtcacctatgaggattatctgagccaagccaagaagatgctatctgaaaggaaggcacttggcattgaagttgccaagattgcaagttaa

Protein Analysis

127

Amino Acids

13.74

Weight (kDa)

9.65

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 3 cut(s) 236, 283, 362
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 255, 289
AvaII GGWCC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 267
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 3 cut(s) 156, 271, 272
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 150, 160, 266
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 150, 160, 266
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 117, 142, 305
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 38, 189
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 3 cut(s) 116, 141, 306
BspLI GGNNCC 3 cut(s) 156, 271, 272
BspPI GGATC 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 150, 160, 266
BssMI GATC 2 cut(s) 38, 189
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 103, 128, 314
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 41, 192
BstMBI GATC 2 cut(s) 38, 189
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 103, 136
Cac8I GCNNGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 270
CviJI RGCY 5 cut(s) 53, 149, 155, 318, 323
CviKI_1 RGCY 5 cut(s) 53, 149, 155, 318, 323
DdeI CTNAG 3 cut(s) 103, 128, 314
DpnI GATC 2 cut(s) 40, 191
DpnII GATC 2 cut(s) 38, 189
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 160
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 270
EcoRV GATATC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaiI YATR 4 cut(s) 45, 47, 198, 303
FaqI GGGAC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 266
HpaII CCGG 1 cut(s) 266
HphI GGTGA 2 cut(s) 255, 289
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 106, 315, 340
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 284, 340
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 4 cut(s) 56, 68, 200, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 3 cut(s) 103, 128, 314
KflI GGGWCCC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 38, 189
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 18, 63, 78, 279
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 321
MaeIII GTNAC 4 cut(s) 31, 176, 261, 295
MalI GATC 2 cut(s) 40, 191
MboI GATC 2 cut(s) 38, 189
MboII GAAGA 2 cut(s) 177, 340
MflI RGATCY 1 cut(s) 189
MluCI AATT 2 cut(s) 231, 284
MnlI CCTC 9 cut(s) 84, 104, 112, 128, 139, 161, 167, 180, 298
MseI TTAA 2 cut(s) 288, 382
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 374
NciI CCSGG 1 cut(s) 267
NdeII GATC 2 cut(s) 38, 189
NlaIV GGNNCC 3 cut(s) 156, 271, 272
NmuCI GTSAC 4 cut(s) 31, 176, 261, 295
PkrI GCNGC 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 156, 271, 272
PspPI GGNCC 1 cut(s) 270
PspPPI RGGWCCY 1 cut(s) 270
PsuI RGATCY 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 288, 382
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 38, 189
Sau96I GGNCC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 267
SetI ASST 6 cut(s) 55, 74, 139, 178, 206, 302
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 2 cut(s) 231, 284
SsiI CCGC 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 98
TasI AATT 2 cut(s) 231, 284
Tru1I TTAA 2 cut(s) 288, 382
Tru9I TTAA 2 cut(s) 288, 382
TscAI CASTG 2 cut(s) 103, 136
TseFI GTSAC 4 cut(s) 31, 176, 261, 295
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 4 cut(s) 31, 176, 261, 295
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 103, 136
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.