Rw3G011870

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000451
Physical Location & Seq
Forward (+)
11734730 .. 11736712
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011870.1

Sequence Viewer

Length: 1074 bp
ATGGCATCTCTGCCAGTGGAACCAAATGTTCAAGAACTGGTTAGGAGTAATGCATTAAAGATCCCCGAGAAGTACCTTTTAAAGAATATAGATCAACAAGACAAGCCAAAGAGTATAGCAAACACTAGTCATGATTTTTCTTCTGATGATATCCCCATCATCCATTTTTCTCTGCTCTCAAGTGGGCACGAGGAGGAGCTTAACAAACTGGATCTGGCTTGCAAGGAATGGGGATTCTATCTCGTTAATCATGGAGTGGCAAGAGAAGTGTTGCAGGGCATGAAGGATGGTTCTGCAAAGTTCTTTGAACTTCCTTTAGAAGAGAAGAATAAAATTTCCATGTCAACAGCAAAAGGCACACGAGAAGGCTATGGACAAGCCTTTGTGGTTACTGAAGAGCAGACCCTCGACTGGTCCGACGCACTGGTTCTCAATCTTTACCCATCCCAGATAAGGAACCTTGAGTATTGGCCAACCACACCAAGGGGATTCAAGGAGGCTATTGAGGCATATGCTAGTGAAGTTAAAAGAGTTGGAGAGGAGATCCTTAGATCTCTGTCTTTAACTATGGGGATGGAGAAGGATGTTCTTCTTGGACTGCATCAAGATTTGGCAGCAGCATTGCGTATAAACTACATTCCTCCATGCTCTATGCCTGATAAAGTACTAGGTCTAAGTGCACATGCGGATGCAGGCACCATTACTGTACTTATGCAAGAAGATAATGTTATCGGATTACAGATTCGAAAACAAGGACAATGGGTGTCAGTCAAGCCGATTCCAAACTCTTTGGTTGTGAATGTTGGAGATGCTCTTGAGATATGGAGCAACGGGAAGTACAAAAGCATTGAACGCAGAGCTGTGACAAACGAAAGCAAGGCAAGGATGTCTAATGCATCATTTATCTTTCCACATGTCGATGTGGAAATTGAGCCGTTCGATCATATACTGGAGTCATCAGGGACCATTCAGATGTATAAGAAGGTCAAATATGGAGATTATTTGATTCAATGCTTGAAGAGGAAAATGGAGGGGAAGGAACACACTCAAAATGCAAAATTAGGAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

357

Amino Acids

40.05

Weight (kDa)

5.8

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 51 - 159 1.8e-24 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 207 - 304 8.1e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 695
AciI CCGC 1 cut(s) 686
AclWI GGATC 3 cut(s) 55, 219, 538
AcoI YGGCCR 1 cut(s) 470
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 5 cut(s) 74, 666, 708, 839, 1069
AfiI CCNNNNNNNGG 3 cut(s) 411, 453, 483
AflIII ACRYGT 1 cut(s) 913
AgsI TTSAA 6 cut(s) 32, 308, 493, 851, 1010, 1018
AhlI ACTAGT 1 cut(s) 125
AluBI AGCT 2 cut(s) 199, 860
AluI AGCT 2 cut(s) 199, 860
Alw21I GWGCWC 1 cut(s) 682
Alw44I GTGCAC 1 cut(s) 678
AlwI GGATC 3 cut(s) 55, 219, 538
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 470
ApaLI GTGCAC 1 cut(s) 678
ApeKI GCWGC 2 cut(s) 614, 617
ApoI RAATTY 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 414, 963
AsuII TTCGAA 1 cut(s) 745
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 2 cut(s) 414, 963
BaeGI GKGCMC 2 cut(s) 189, 682
BalI TGGCCA 1 cut(s) 472
BanI GGYRCC 1 cut(s) 695
BauI CACGAG 2 cut(s) 188, 360
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 2 cut(s) 626, 629
BccI CCATC 4 cut(s) 164, 281, 451, 568
BceAI ACGGC 1 cut(s) 919
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 3 cut(s) 126, 516, 668
BglII AGATCT 1 cut(s) 551
BisI GCNGC 2 cut(s) 615, 618
BlsI GCNGC 2 cut(s) 616, 619
BmcAI AGTACT 2 cut(s) 666, 1069
Bme18I GGWCC 2 cut(s) 414, 963
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 414, 963
BmiI GGNNCC 4 cut(s) 21, 458, 697, 964
BmsI GCATC 5 cut(s) 14, 610, 679, 799, 905
BpmI CTGGAG 1 cut(s) 971
Bpu14I TTCGAA 1 cut(s) 745
BpuEI CTTGAG 3 cut(s) 163, 482, 836
BsaJI CCNNGG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 453, 483
Bse1I ACTGG 6 cut(s) 14, 42, 213, 416, 429, 954
Bse3DI GCAATG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 7 cut(s) 159, 292, 443, 579, 589, 694, 891
BseLI CCNNNNNNNGG 3 cut(s) 411, 453, 483
BseMI GCAATG 1 cut(s) 620
BseNI ACTGG 6 cut(s) 14, 42, 213, 416, 429, 954
BseRI GAGGAG 3 cut(s) 206, 209, 554
BseSI GKGCMC 2 cut(s) 189, 682
BseXI GCAGC 2 cut(s) 626, 629
BshFI GGCC 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 695
BsiHKAI GWGCWC 1 cut(s) 682
BsiHKCI CYCGRG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 3 cut(s) 411, 453, 483
BsmFI GGGAC 1 cut(s) 976
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 189, 682
Bsp143I GATC 6 cut(s) 60, 91, 211, 543, 551, 940
BspACI CCGC 1 cut(s) 686
BspANI GGCC 1 cut(s) 472
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 21, 458, 697, 964
BspPI GGATC 3 cut(s) 55, 219, 538
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 745
BspT107I GGYRCC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 6 cut(s) 14, 42, 213, 416, 429, 954
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 6 cut(s) 60, 91, 211, 543, 551, 940
BssSI CACGAG 2 cut(s) 188, 360
BssT1I CCWWGG 1 cut(s) 482
Bst2BI CACGAG 2 cut(s) 188, 360
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 3 cut(s) 315, 390, 1013
BstBI TTCGAA 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 220, 694
BstDEI CTNAG 2 cut(s) 548, 674
BstF5I GGATG 7 cut(s) 159, 292, 443, 579, 589, 694, 891
BstKTI GATC 6 cut(s) 63, 94, 214, 546, 554, 943
BstMBI GATC 6 cut(s) 60, 91, 211, 543, 551, 940
BstMWI GCNNNNNNNGC 2 cut(s) 506, 852
BstNSI RCATGY 2 cut(s) 686, 917
BstSLI GKGCMC 2 cut(s) 189, 682
BstV1I GCAGC 2 cut(s) 626, 629
BstX2I RGATCY 4 cut(s) 60, 211, 543, 551
BstYI RGATCY 4 cut(s) 60, 211, 543, 551
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 7 cut(s) 159, 292, 443, 579, 589, 694, 891
BtsIMutI CAGTG 2 cut(s) 21, 422
Cac8I GCNNGC 2 cut(s) 220, 694
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 414, 963
CseI GACGC 1 cut(s) 428
Csp6I GTAC 5 cut(s) 73, 665, 707, 838, 1068
CviAII CATG 7 cut(s) 131, 251, 280, 340, 645, 683, 914
CviQI GTAC 5 cut(s) 73, 665, 707, 838, 1068
DdeI CTNAG 2 cut(s) 548, 674
DpnI GATC 6 cut(s) 62, 93, 213, 545, 553, 942
DpnII GATC 6 cut(s) 60, 91, 211, 543, 551, 940
DraI TTTAAA 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 3 cut(s) 315, 390, 1013
EarI CTCTTC 3 cut(s) 315, 390, 1013
Eco130I CCWWGG 1 cut(s) 482
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 414, 963
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 65
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 2 cut(s) 55, 898
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 7 cut(s) 134, 254, 283, 343, 648, 686, 917
FaqI GGGAC 1 cut(s) 976
FatI CATG 7 cut(s) 130, 250, 279, 339, 644, 682, 913
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 615, 618
FokI GGATG 7 cut(s) 146, 299, 430, 586, 596, 701, 898
Fsp4HI GCNGC 2 cut(s) 615, 618
FspBI CTAG 3 cut(s) 126, 516, 668
GluI GCNGC 2 cut(s) 615, 618
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 1 cut(s) 472
HgaI GACGC 1 cut(s) 428
Hin1II CATG 7 cut(s) 134, 254, 283, 343, 648, 686, 917
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 6 cut(s) 234, 489, 742, 778, 953, 1006
Hpy166II GTNNAC 2 cut(s) 345, 680
Hpy188I TCNGA 4 cut(s) 145, 418, 734, 972
Hpy188III TCNNGA 4 cut(s) 32, 131, 605, 815
Hpy8I GTNNAC 2 cut(s) 345, 680
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 5 cut(s) 277, 359, 574, 976, 1030
HpyCH4III ACNGT 1 cut(s) 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 852
HpyF3I CTNAG 2 cut(s) 548, 674
Hsp92II CATG 7 cut(s) 134, 254, 283, 343, 648, 686, 917
Kzo9I GATC 6 cut(s) 60, 91, 211, 543, 551, 940
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 196, 825
Lsp1109I GCAGC 2 cut(s) 626, 629
LweI GCATC 5 cut(s) 14, 610, 679, 799, 905
MaeI CTAG 3 cut(s) 126, 516, 668
MaeIII GTNAC 2 cut(s) 388, 862
MalI GATC 6 cut(s) 62, 93, 213, 545, 553, 942
MboI GATC 6 cut(s) 60, 91, 211, 543, 551, 940
MboII GAAGA 7 cut(s) 132, 332, 337, 407, 581, 731, 1030
MflI RGATCY 4 cut(s) 60, 211, 543, 551
MhlI GDGCHC 2 cut(s) 189, 682
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 3 cut(s) 333, 927, 1058
MluNI TGGCCA 1 cut(s) 472
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 3 cut(s) 441, 514, 784
MnlI CCTC 9 cut(s) 184, 187, 416, 490, 499, 532, 651, 1014, 1024
Mox20I TGGCCA 1 cut(s) 472
Mph1103I ATGCAT 2 cut(s) 55, 898
MscI TGGCCA 1 cut(s) 472
MseI TTAA 7 cut(s) 56, 80, 201, 246, 525, 563, 1072
MslI CAYNNNNRTG 3 cut(s) 687, 918, 971
Msp20I TGGCCA 1 cut(s) 472
MwoI GCNNNNNNNGC 2 cut(s) 506, 852
NdeI CATATG 1 cut(s) 511
NdeII GATC 6 cut(s) 60, 91, 211, 543, 551, 940
NlaIII CATG 7 cut(s) 134, 254, 283, 343, 648, 686, 917
NlaIV GGNNCC 4 cut(s) 21, 458, 697, 964
NmuCI GTSAC 1 cut(s) 862
NsiI ATGCAT 2 cut(s) 55, 898
NspI RCATGY 2 cut(s) 686, 917
NspV TTCGAA 1 cut(s) 745
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 913
PciSI GCTCTTC 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 5 cut(s) 234, 489, 742, 778, 1006
PkrI GCNGC 2 cut(s) 616, 619
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
PscI ACATGT 1 cut(s) 913
PspN4I GGNNCC 4 cut(s) 21, 458, 697, 964
PspPI GGNCC 2 cut(s) 414, 963
PsuI RGATCY 4 cut(s) 60, 211, 543, 551
RsaI GTAC 5 cut(s) 74, 666, 708, 839, 1069
RsaNI GTAC 5 cut(s) 73, 665, 707, 838, 1068
RseI CAYNNNNRTG 3 cut(s) 687, 918, 971
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 7 cut(s) 56, 80, 201, 246, 525, 563, 1072
SatI GCNGC 2 cut(s) 615, 618
Sau3AI GATC 6 cut(s) 60, 91, 211, 543, 551, 940
Sau96I GGNCC 2 cut(s) 414, 963
ScaI AGTACT 2 cut(s) 666, 1069
SchI GAGTC 1 cut(s) 962
SduI GDGCHC 2 cut(s) 189, 682
SetI ASST 6 cut(s) 78, 201, 462, 673, 862, 987
SfaNI GCATC 5 cut(s) 14, 610, 679, 799, 905
SfuI TTCGAA 1 cut(s) 745
SinI GGWCC 2 cut(s) 414, 963
SmiMI CAYNNNNRTG 3 cut(s) 687, 918, 971
SmlI CTYRAG 3 cut(s) 178, 461, 815
SmoI CTYRAG 3 cut(s) 178, 461, 815
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 3 cut(s) 333, 927, 1058
SsiI CCGC 1 cut(s) 686
SspMI CTAG 3 cut(s) 126, 516, 668
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 1 cut(s) 706
TaqI TCGA 4 cut(s) 408, 745, 918, 939
TasI AATT 3 cut(s) 333, 927, 1058
TatI WGTACW 4 cut(s) 664, 706, 837, 1067
TfiI GAWTC 5 cut(s) 234, 489, 742, 778, 1006
Tru1I TTAA 7 cut(s) 56, 80, 201, 246, 525, 563, 1072
Tru9I TTAA 7 cut(s) 56, 80, 201, 246, 525, 563, 1072
TscAI CASTG 2 cut(s) 21, 429
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 2 cut(s) 614, 617
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 2 cut(s) 21, 429
VneI GTGCAC 1 cut(s) 678
VpaK11BI GGWCC 2 cut(s) 414, 963
XapI RAATTY 1 cut(s) 333
XceI RCATGY 2 cut(s) 686, 917
XspI CTAG 3 cut(s) 126, 516, 668
ZrmI AGTACT 2 cut(s) 666, 1069
Zsp2I ATGCAT 2 cut(s) 55, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.