Rroxscaffold_6G00414790

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000451
Physical Location & Seq
Reverse (-)
37074194 .. 37076537
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414790.1

Sequence Viewer

Length: 1224 bp
ATGGTTTCAAATCCTGATCATGTCACATTAGCAGAAGGGGAGGTTGCACCAAGTTTTGCCTCATCTCTGCCAGTACCAAATGTTCAAGAAACAGTGAGAGATGATCCTTTGCAGGTCCCAGAAAGATACCTAAGTAATAAAGAAGACGTGTCAAAGATTGCAGATACATGTCATCATGATATTGCTTCTGAGATTCCTATCATTGATTTTTCTCTGCTTTTAAAACAGCACAAGGAGGAGCTTAACAAGCTGGACATGGCTTGCAAAGAATGGGGATTCTTTCAGATGGTAAACCATGGAGTGACAAGAGAAGTGATGCAGGGCATGAAAGATGCTGCGGCGGAGTTCTTTGAACTTCCTCTAGAAGAGAAGAACAGAATATCAATGCCATCAGATGACATACAAGGCTATGGGCATGCCTATGTGGTTTCTGAAGACCAGATACTGGACTGGTCTGACGCATTGATCCTTGTAGTTTACCCATCCAAGTATCGAAAGCTTGAGTTTTGGCCAACCAAACCAAAGGTGTTCAAGGATGCTACTGAGGCGTATTCTAGTGAAGTTAAGAAAGTTGGAGAGGAGCTTCTAAGGTGTCTATCTATGATTATGGGAATGGAGAATGATGCTCTTCTTGGACTGCACAGAGAGTTGGTCCAAGCTTTGCGTTTGAATTATTATCCTCCATGCTGCATGCCTGATAGAGTACTAGGCATAAGTCCACACTCGGACACAAACACCATAACCATACTCATGCAAGAAGACAATGTTACCGGATTGCAGATACAGAAAGGAGGAGAATGGGTGCCGGTCAAGCCACTTCCAAATGCTCTCATTGTGAATGTCGGAGATGTTCTTGAGATATGGAGCAATGGAAAATATAAAAGCGTTGAGCACAGAGCTGTGACAACAACAAGCCAGCCGAGGTTGTCTTATGCATCATTTCTATTTCCACATGACGTTGTGGAAGTTGAACCTTTTGATCACATGGTGGAGTCACAAAGGAATATTGAAAATGATATGCCAAAGAGTACAGATCATGCATGTCATCTTTCTTCTGAAATTCCTATGAATGATCTTTCTCGGCTTTCAAAAGGGCACCAGGAAGAGCTTAGCAAACCGAACCTGGCATGCAAACAATGGGGATTTGGGGATTCTTTCAGCAGTATAATATTGCAGGGAATGAAGGATGCTATGGTGAAATTCATTGAACTGCCGTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

407

Amino Acids

46.02

Weight (kDa)

4.98

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 65 - 172 7.5e-30 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 219 - 317 1.5e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AccB1I GGYRCC 2 cut(s) 802, 1095
AccB7I CCANNNNNTGG 1 cut(s) 445
AciI CCGC 2 cut(s) 338, 341
AclWI GGATC 2 cut(s) 98, 460
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 2 cut(s) 1059, 1199
AcuI CTGAAG 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 988
AfaI GTAC 3 cut(s) 75, 705, 1030
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 2 cut(s) 147, 167
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 2 cut(s) 1098, 1122
AluBI AGCT 7 cut(s) 241, 250, 499, 583, 659, 899, 1108
AluI AGCT 7 cut(s) 241, 250, 499, 583, 659, 899, 1108
Alw21I GWGCWC 1 cut(s) 894
AlwI GGATC 2 cut(s) 98, 460
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 335, 687
ApoI RAATTY 2 cut(s) 1059, 1199
AspS9I GGNCC 2 cut(s) 115, 652
AsuHPI GGTGA 1 cut(s) 1207
AvaII GGWCC 2 cut(s) 115, 652
BaeGI GKGCMC 1 cut(s) 1098
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BalI TGGCCA 1 cut(s) 511
BanI GGYRCC 2 cut(s) 802, 1095
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BbsI GAAGAC 3 cut(s) 150, 441, 765
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 2 cut(s) 322, 674
BccI CCATC 3 cut(s) 280, 397, 490
BceAI ACGGC 1 cut(s) 1198
BciT130I CCWGG 2 cut(s) 1100, 1124
BclI TGATCA 2 cut(s) 16, 979
BfaI CTAG 3 cut(s) 362, 555, 707
BfuAI ACCTGC 1 cut(s) 103
BisI GCNGC 3 cut(s) 336, 339, 688
BlpI GCTNAGC 1 cut(s) 1109
BlsI GCNGC 3 cut(s) 337, 340, 689
BmcAI AGTACT 1 cut(s) 705
Bme1390I CCNGG 2 cut(s) 1100, 1124
Bme18I GGWCC 2 cut(s) 115, 652
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 115, 652
BmiI GGNNCC 3 cut(s) 117, 804, 1097
BmrFI CCNGG 2 cut(s) 1100, 1124
BmsI GCATC 6 cut(s) 306, 322, 526, 613, 944, 1177
BpiI GAAGAC 3 cut(s) 150, 441, 765
Bpu1102I GCTNAGC 1 cut(s) 1109
BpuEI CTTGAG 2 cut(s) 521, 875
BsaBI GATNNNNATC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 295, 920
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 3 cut(s) 71, 450, 455
Bse3DI GCAATG 1 cut(s) 874
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 2 cut(s) 1100, 1124
BseDI CCNNGG 2 cut(s) 295, 920
BseGI GGATG 3 cut(s) 482, 541, 1192
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 180, 534
BseNI ACTGG 3 cut(s) 71, 450, 455
BseRI GAGGAG 3 cut(s) 251, 593, 807
BseSI GKGCMC 1 cut(s) 1098
BseXI GCAGC 2 cut(s) 322, 674
BsgI GTGCAG 1 cut(s) 623
BshFI GGCC 1 cut(s) 511
BshNI GGYRCC 2 cut(s) 802, 1095
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 2 cut(s) 771, 806
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 511
Bsp1286I GDGCHC 2 cut(s) 894, 1098
Bsp143I GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
Bsp1720I GCTNAGC 1 cut(s) 1109
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 2 cut(s) 338, 341
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 2 cut(s) 181, 535
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 3 cut(s) 117, 804, 1097
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 2 cut(s) 98, 460
BspQI GCTCTTC 2 cut(s) 633, 1098
BspT107I GGYRCC 2 cut(s) 802, 1095
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 3 cut(s) 71, 450, 455
BssAI RCCGGY 1 cut(s) 805
BssECI CCNNGG 2 cut(s) 295, 920
BssMI GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 1100, 1124
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 3 cut(s) 360, 633, 1098
BstC8I GCNNGC 5 cut(s) 262, 417, 692, 917, 1129
BstDEI CTNAG 5 cut(s) 131, 189, 543, 587, 1109
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 482, 541, 1192
BstKTI GATC 6 cut(s) 19, 106, 468, 982, 1036, 1075
BstMBI GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
BstMWI GCNNNNNNNGC 3 cut(s) 247, 545, 811
BstNI CCWGG 2 cut(s) 1100, 1124
BstNSI RCATGY 5 cut(s) 171, 419, 694, 1044, 1131
BstSCI CCNGG 2 cut(s) 1098, 1122
BstSLI GKGCMC 1 cut(s) 1098
BstV1I GCAGC 2 cut(s) 322, 674
BstV2I GAAGAC 3 cut(s) 150, 441, 765
BsuRI GGCC 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 295
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 482, 541, 1192
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 5 cut(s) 262, 417, 692, 917, 1129
CaiI CAGNNNCTG 1 cut(s) 445
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 2 cut(s) 115, 652
CseI GACGC 1 cut(s) 467
Csp6I GTAC 3 cut(s) 74, 704, 1029
CviQI GTAC 3 cut(s) 74, 704, 1029
DdeI CTNAG 5 cut(s) 131, 189, 543, 587, 1109
DpnI GATC 6 cut(s) 18, 105, 467, 981, 1035, 1074
DpnII GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
DraI TTTAAA 1 cut(s) 222
DraIII CACNNNGTG 1 cut(s) 988
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 3 cut(s) 360, 633, 1098
EarI CTCTTC 3 cut(s) 360, 633, 1098
EciI GGCGGA 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 115, 652
Eco57I CTGAAG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 1098, 1122
EcoT14I CCWWGG 1 cut(s) 295
EcoT22I ATGCAT 2 cut(s) 937, 1042
ErhI CCWWGG 1 cut(s) 295
FaqI GGGAC 1 cut(s) 101
FbaI TGATCA 2 cut(s) 16, 979
Fnu4HI GCNGC 3 cut(s) 336, 339, 688
FokI GGATG 3 cut(s) 469, 548, 1199
Fsp4HI GCNGC 3 cut(s) 336, 339, 688
FspBI CTAG 3 cut(s) 362, 555, 707
GluI GCNGC 3 cut(s) 336, 339, 688
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 771, 806
HgaI GACGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 497, 657
HinfI GANTC 4 cut(s) 193, 276, 992, 1151
HpaII CCGG 2 cut(s) 771, 806
HphI GGTGA 1 cut(s) 1207
Hpy166II GTNNAC 3 cut(s) 292, 478, 719
Hpy188I TCNGA 8 cut(s) 190, 285, 394, 433, 457, 727, 845, 1057
Hpy188III TCNNGA 5 cut(s) 14, 86, 176, 362, 854
Hpy8I GTNNAC 3 cut(s) 292, 478, 719
HpyAV CCTTC 2 cut(s) 29, 1177
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 147, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 545, 811
HpyF3I CTNAG 5 cut(s) 131, 189, 543, 587, 1109
HpySE526I ACGT 2 cut(s) 147, 957
Ksp22I TGATCA 2 cut(s) 16, 979
Kzo9I GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
LguI GCTCTTC 2 cut(s) 633, 1098
LmnI GCTCC 3 cut(s) 238, 580, 864
Lsp1109I GCAGC 2 cut(s) 322, 674
LweI GCATC 6 cut(s) 306, 322, 526, 613, 944, 1177
MaeI CTAG 3 cut(s) 362, 555, 707
MaeII ACGT 2 cut(s) 147, 957
MaeIII GTNAC 5 cut(s) 22, 301, 766, 901, 993
MalI GATC 6 cut(s) 18, 105, 467, 981, 1035, 1074
MboI GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
MboII GAAGA 8 cut(s) 155, 377, 382, 446, 620, 770, 1044, 1115
MhlI GDGCHC 2 cut(s) 894, 1098
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 3 cut(s) 670, 1059, 1199
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 1 cut(s) 1001
MmeI TCCRAC 2 cut(s) 553, 823
MnlI CCTC 9 cut(s) 34, 70, 229, 369, 538, 571, 690, 785, 915
Mox20I TGGCCA 1 cut(s) 511
Mph1103I ATGCAT 2 cut(s) 937, 1042
MscI TGGCCA 1 cut(s) 511
MseI TTAA 3 cut(s) 221, 243, 564
MslI CAYNNNNRTG 2 cut(s) 420, 749
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 2 cut(s) 771, 806
MspR9I CCNGG 2 cut(s) 1100, 1124
MvaI CCWGG 2 cut(s) 1100, 1124
MwoI GCNNNNNNNGC 3 cut(s) 247, 545, 811
NcoI CCATGG 1 cut(s) 295
NdeII GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
NlaIV GGNNCC 3 cut(s) 117, 804, 1097
NmeAIII GCCGAG 2 cut(s) 945, 1060
NmuCI GTSAC 4 cut(s) 22, 301, 901, 993
NsiI ATGCAT 2 cut(s) 937, 1042
NspI RCATGY 5 cut(s) 171, 419, 694, 1044, 1131
PaeI GCATGC 3 cut(s) 419, 694, 1131
PagI TCATGA 1 cut(s) 175
PciI ACATGT 1 cut(s) 167
PciSI GCTCTTC 2 cut(s) 633, 1098
PfeI GAWTC 3 cut(s) 193, 276, 1151
PflMI CCANNNNNTGG 1 cut(s) 445
PkrI GCNGC 3 cut(s) 337, 340, 689
PleI GAGTC 1 cut(s) 1000
PpsI GAGTC 1 cut(s) 1000
PpuMI RGGWCCY 1 cut(s) 115
PscI ACATGT 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 1098, 1122
PspGI CCWGG 2 cut(s) 1098, 1122
PspN4I GGNNCC 3 cut(s) 117, 804, 1097
PspPI GGNCC 2 cut(s) 115, 652
PspPPI RGGWCCY 1 cut(s) 115
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
PstNI CAGNNNCTG 1 cut(s) 445
RsaI GTAC 3 cut(s) 75, 705, 1030
RsaNI GTAC 3 cut(s) 74, 704, 1029
RseI CAYNNNNRTG 2 cut(s) 420, 749
SapI GCTCTTC 2 cut(s) 633, 1098
SaqAI TTAA 3 cut(s) 221, 243, 564
SatI GCNGC 3 cut(s) 336, 339, 688
Sau3AI GATC 6 cut(s) 16, 103, 465, 979, 1033, 1072
Sau96I GGNCC 2 cut(s) 115, 652
ScaI AGTACT 1 cut(s) 705
SchI GAGTC 1 cut(s) 1001
ScrFI CCNGG 2 cut(s) 1100, 1124
SduI GDGCHC 2 cut(s) 894, 1098
SfaNI GCATC 6 cut(s) 306, 322, 526, 613, 944, 1177
SinI GGWCC 2 cut(s) 115, 652
SmiMI CAYNNNNRTG 2 cut(s) 420, 749
SmlI CTYRAG 2 cut(s) 500, 854
SmoI CTYRAG 2 cut(s) 500, 854
SphI GCATGC 3 cut(s) 419, 694, 1131
Sse9I AATT 3 cut(s) 670, 1059, 1199
SsiI CCGC 2 cut(s) 338, 341
SspI AATATT 2 cut(s) 1006, 1170
SspMI CTAG 3 cut(s) 362, 555, 707
StyD4I CCNGG 2 cut(s) 1098, 1122
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 2 cut(s) 150, 960
TaqI TCGA 1 cut(s) 493
TasI AATT 3 cut(s) 670, 1059, 1199
TatI WGTACW 2 cut(s) 703, 1028
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 3 cut(s) 193, 276, 1151
Tru1I TTAA 3 cut(s) 221, 243, 564
Tru9I TTAA 3 cut(s) 221, 243, 564
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 4 cut(s) 22, 301, 901, 993
TseI GCWGC 2 cut(s) 335, 687
Tsp45I GTSAC 4 cut(s) 22, 301, 901, 993
TspDTI ATGAA 4 cut(s) 341, 1082, 1192, 1196
TspRI CASTG 1 cut(s) 99
Van91I CCANNNNNTGG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 115, 652
XapI RAATTY 2 cut(s) 1059, 1199
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 5 cut(s) 171, 419, 694, 1044, 1131
XspI CTAG 3 cut(s) 362, 555, 707
ZrmI AGTACT 1 cut(s) 705
Zsp2I ATGCAT 2 cut(s) 937, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.