RLG00000015425

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000451
Physical Location & Seq
Reverse (-)
65868431 .. 65869012
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015425

Sequence Viewer

Length: 498 bp
ATGGGGATGGAGAAGGATGCTCTTCTTGGATTTCATCAAGAGTTGGTCCAAGTTTTTCGTGTGACCTACTATCCTCCATGCTCCATGCCAGATAAAGTACTAGGCTTAAGTCCACACTCCGACACAAGCACCATAACCATACTCATGCAGGAAGACGATGTTACCGGTTTACATATTCGAAAAGAAGGAAAATGGGTGCCGGTAGAGCCAATTCCAAATGCTTTCGTTGTGAACGTCGGAGATATGATTGAGATATGGAGCAATGGGAAGTACAAGAGCATTGAACATAGAGCTGTGACGAACAAAAGCAACGCAAGATTATCTTATGCAACATTTATAATTCCACGCAACGATGTTGAAATTGGACCATTTAATCATTTAGTGGACCAGTCATCTCGAAAGTACAAGAAAGTCATATACGGAGAATATTTGAGGAGTTCCTTCAAGGGAAAACTTGAGGGGAAGTCGCACACTGAAACAGCAAAGATCGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

8.58

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 17 - 114 1.9e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 196
AfaI GTAC 3 cut(s) 99, 272, 404
AflII CTTAAG 1 cut(s) 106
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 3 cut(s) 284, 359, 445
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AsiGI ACCGGT 1 cut(s) 164
AspS9I GGNCC 3 cut(s) 46, 365, 385
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 3 cut(s) 46, 365, 385
BanI GGYRCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 159
BfaI CTAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 99
Bme18I GGWCC 3 cut(s) 46, 365, 385
BmgT120I GGNCC 3 cut(s) 46, 365, 385
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 476
BsaWI WCCGGW 1 cut(s) 164
Bse118I RCCGGY 2 cut(s) 164, 199
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 1 cut(s) 268
BseGI GGATG 2 cut(s) 12, 22
BseMI GCAATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 164
BsiSI CCGG 2 cut(s) 165, 200
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 27
BspT104I TTCGAA 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 164, 199
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 2 cut(s) 164, 199
BssMI GATC 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 106
BstBI TTCGAA 1 cut(s) 178
BstF5I GGATG 2 cut(s) 12, 22
BstKTI GATC 1 cut(s) 489
BstMBI GATC 1 cut(s) 486
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 159
BtsCI GGATG 2 cut(s) 12, 22
BtsIMutI CAGTG 1 cut(s) 471
Cfr10I RCCGGY 2 cut(s) 164, 199
Cfr13I GGNCC 3 cut(s) 46, 365, 385
Csp6I GTAC 3 cut(s) 98, 271, 403
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 3 cut(s) 78, 85, 145
CviJI RGCY 3 cut(s) 105, 208, 293
CviKI_1 RGCY 3 cut(s) 105, 208, 293
CviQI GTAC 3 cut(s) 98, 271, 403
DpnI GATC 1 cut(s) 488
DpnII GATC 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco47I GGWCC 3 cut(s) 46, 365, 385
FaeI CATG 3 cut(s) 81, 88, 148
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 3 cut(s) 77, 84, 144
FokI GGATG 2 cut(s) 19, 29
FspBI CTAG 1 cut(s) 101
HapII CCGG 2 cut(s) 165, 200
Hin1II CATG 3 cut(s) 81, 88, 148
HpaII CCGG 2 cut(s) 165, 200
Hpy166II GTNNAC 4 cut(s) 113, 170, 232, 385
Hpy188I TCNGA 3 cut(s) 121, 239, 491
Hpy188III TCNNGA 2 cut(s) 38, 396
Hpy8I GTNNAC 4 cut(s) 113, 170, 232, 385
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 7, 179, 451
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 148, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 3 cut(s) 81, 88, 148
Kzo9I GATC 1 cut(s) 486
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 86, 258
LpnPI CCDG 5 cut(s) 102, 134, 178, 213, 401
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 3 cut(s) 61, 160, 295
MalI GATC 1 cut(s) 488
MboI GATC 1 cut(s) 486
MboII GAAGA 2 cut(s) 14, 164
MluCI AATT 3 cut(s) 210, 339, 360
MmeI TCCRAC 2 cut(s) 144, 217
MnlI CCTC 3 cut(s) 84, 426, 451
MseI TTAA 3 cut(s) 107, 372, 496
MslI CAYNNNNRTG 1 cut(s) 143
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 2 cut(s) 165, 200
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 486
NlaIII CATG 3 cut(s) 81, 88, 148
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 2 cut(s) 61, 295
NspV TTCGAA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PinAI ACCGGT 1 cut(s) 164
PsiI TTATAA 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 46, 365, 385
RsaI GTAC 3 cut(s) 99, 272, 404
RsaNI GTAC 3 cut(s) 98, 271, 403
RseI CAYNNNNRTG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 107, 372, 496
Sau3AI GATC 1 cut(s) 486
Sau96I GGNCC 3 cut(s) 46, 365, 385
ScaI AGTACT 1 cut(s) 99
SetI ASST 3 cut(s) 68, 237, 295
SfaNI GCATC 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 3 cut(s) 46, 365, 385
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 106, 455
SmoI CTYRAG 2 cut(s) 106, 455
Sse9I AATT 3 cut(s) 210, 339, 360
SspI AATATT 1 cut(s) 428
SspMI CTAG 1 cut(s) 101
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 178, 397
TasI AATT 3 cut(s) 210, 339, 360
TatI WGTACW 3 cut(s) 97, 270, 402
Tru1I TTAA 3 cut(s) 107, 372, 496
Tru9I TTAA 3 cut(s) 107, 372, 496
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 2 cut(s) 61, 295
Tsp45I GTSAC 2 cut(s) 61, 295
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 1 cut(s) 478
Vha464I CTTAAG 1 cut(s) 106
VpaK11BI GGWCC 3 cut(s) 46, 365, 385
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.