Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Reverse (-)

37039862 .. 37040239

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTCACCGGTTTGCAGATTCAGAAAGGAGGAGAATGGGTGTCACGAGCCAATTCCAAACGCTCTTGTTGTGAATGTTGGAGATGTTCTTGAGATATGGACTAATGGGAAGTACAAGAGCATTGAGCACGTAGCCGTGACGACCAAAAACAAGGCGAGGTTATCCTATGCAACATTTCTTTTCCCACATGACGATGTGGAAGTTGAACCAATTTATGATATTGTGGAGTCACAGACGATGTACAAGAAAGTCAGATATGGAGATTATCTCGACAGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

93

Amino Acids

10.71

Weight (kDa)

5.53

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	16 - 62	4.1e-13	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	113, 242
AgeI	ACCGGT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	129
AsiGI	ACCGGT	1 cut(s)	7
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	119
BplI	GAGNNNNNCTC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bse118I	RCCGGY	1 cut(s)	7
BseRI	GAGGAG	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	240
BssAI	RCCGGY	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	112, 241
CspAI	ACCGGT	1 cut(s)	7
CviAII	CATG	2 cut(s)	188, 279
CviJI	RGCY	2 cut(s)	49, 134
CviKI_1	RGCY	2 cut(s)	49, 134
CviQI	GTAC	2 cut(s)	112, 241
FaeI	CATG	2 cut(s)	191, 282
FaiI	YATR	6 cut(s)	97, 168, 189, 216, 258, 280
FatI	CATG	2 cut(s)	187, 278
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	191, 282
HinfI	GANTC	2 cut(s)	18, 227
HpaII	CCGG	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	23, 254
Hpy188III	TCNNGA	3 cut(s)	44, 89, 269
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	15, 170
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	191, 282
LpnPI	CCDG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	3, 41, 136, 228
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	51, 210
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	22, 150
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	8
NlaIII	CATG	2 cut(s)	191, 282
NmuCI	GTSAC	4 cut(s)	3, 41, 136, 228
PfeI	GAWTC	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	7
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	130
RsaI	GTAC	2 cut(s)	113, 242
RsaNI	GTAC	2 cut(s)	112, 241
RseI	CAYNNNNRTG	1 cut(s)	192
SchI	GAGTC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	2 cut(s)	132, 161
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	51, 210
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	51, 210
TatI	WGTACW	2 cut(s)	111, 240
TfiI	GAWTC	1 cut(s)	18
TseFI	GTSAC	4 cut(s)	3, 41, 136, 228
Tsp45I	GTSAC	4 cut(s)	3, 41, 136, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.