Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

12501696 .. 12504513

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATAAATCATGGAGTGGAAACAGAAGTAATGCAGGGCATCAAGGATGCTGCGGACAAGTTCTTTGAACTTCCAATAGAAGAGAAGAATTTTATTGCTGTGCCATCAGCTCAGAGACAAGGCTATGGTTTTAACCAAGCAATTTCTGAGGAGAAGATTTTGGATTGGTCTGACAGAATTCTTCTCGGGCTTTACCCATATCGACATAGAAAGCCTGAGGTTTGGCCACCGACACCACTCAAGGAAGCTATTGAGATATATGGTAGTGAAGTTAGACATGTTGCAGAGGAGCTCCTGAGATCTCTATCTTTGATTATGGGGATGGAGAAGGATGTTCTTCTTGAACTACATCAAGAGCTGGCACAATTTCTGTCTGTGGCGTATTATCCTTCATGCTCTATGCCTGACAAAGTACTAGGTCTAACCCCTCACTCCGACAAAGCTAGCATAACCATACTTATGCAAGACGACGGTCTTACCGGACTACAACTTAAACATGAAGGAAAATGGGTACCGGTGAAGCCAATTCCAAACTCTTTGGTTGTGAATGTTGGAGATGCGATTGAGATATGGAGTAATGGGATGTACAAGAGCATTGAGCACAGAGTCGTGACAAATGAAAGCAAAGCAAGGTTATCTTATGCATCATTTTTTGCGCCACATGAAGATGCAGAAATTGAGCCCTTTGATCAAATGGTACTCAACTCTCCAGAGTCCATTCAGATATACAAGAAAGTCAAATATGGAGAATATATTAAGGAAGGTATCTCGAAGAAGAAATTTTATGAGAAAGAACAAATTGAATTTGCCAAGATTGGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

274

Amino Acids

31.23

Weight (kDa)

5.38

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	2 - 77	8.5e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	122 - 220	1.5e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	511
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	4 cut(s)	88, 177, 779, 803
AfaI	GTAC	4 cut(s)	414, 513, 587, 699
AflIII	ACRYGT	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	68, 344, 803
AluBI	AGCT	5 cut(s)	110, 248, 292, 358, 443
AluI	AGCT	5 cut(s)	110, 248, 292, 358, 443
Alw21I	GWGCWC	2 cut(s)	294, 603
Alw26I	GTCTC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	4 cut(s)	88, 177, 779, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AsiGI	ACCGGT	1 cut(s)	514
Asp718I	GGTACC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	658
AsuHPI	GGTGA	1 cut(s)	529
AsuNHI	GCTAGC	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	294, 684
Bbv12I	GWGCWC	2 cut(s)	294, 603
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	112, 316
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	416, 444
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	513
BmsI	GCATC	5 cut(s)	37, 48, 547, 653, 658
BmtI	GCTAGC	1 cut(s)	447
BoxI	GACNNNNGTC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	304
BsaWI	WCCGGW	2 cut(s)	479, 514
Bse118I	RCCGGY	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	304
BseGI	GGATG	4 cut(s)	52, 327, 337, 588
BseJI	GATNNNNATC	1 cut(s)	304
BseMII	CTCAG	4 cut(s)	125, 138, 207, 287
BseRI	GAGGAG	2 cut(s)	164, 302
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	511
BshTI	ACCGGT	1 cut(s)	514
BsiHKAI	GWGCWC	2 cut(s)	294, 603
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	480, 515
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	294, 603, 684
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	2 cut(s)	299, 688
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	4 cut(s)	124, 139, 208, 288
BspLI	GGNNCC	1 cut(s)	513
BspOI	GCTAGC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	514
BsrGI	TGTACA	1 cut(s)	585
BssAI	RCCGGY	1 cut(s)	514
BssMI	GATC	2 cut(s)	299, 688
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	360, 445
BstDEI	CTNAG	4 cut(s)	111, 147, 216, 296
BstF5I	GGATG	4 cut(s)	52, 327, 337, 588
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	2 cut(s)	302, 691
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	299, 688
BstNSI	RCATGY	1 cut(s)	281
BstPAI	GACNNNNGTC	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu36I	CCTNAGG	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	4 cut(s)	52, 327, 337, 588
Cac8I	GCNNGC	2 cut(s)	360, 445
CfoI	GCGC	1 cut(s)	658
Cfr10I	RCCGGY	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	413, 512, 586, 698
CspAI	ACCGGT	1 cut(s)	514
CviAII	CATG	5 cut(s)	11, 278, 393, 497, 662
CviQI	GTAC	4 cut(s)	413, 512, 586, 698
DdeI	CTNAG	4 cut(s)	111, 147, 216, 296
DpnI	GATC	2 cut(s)	301, 690
DpnII	GATC	2 cut(s)	299, 688
EaeI	YGGCCR	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	294, 684
Eco53kI	GAGCTC	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	2 cut(s)	294, 684
FaeI	CATG	5 cut(s)	14, 281, 396, 500, 665
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	5 cut(s)	10, 277, 392, 496, 661
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	4 cut(s)	59, 334, 344, 595
FriOI	GRGCYC	2 cut(s)	294, 684
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	416, 444
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	2 cut(s)	480, 515
HhaI	GCGC	1 cut(s)	658
Hin1II	CATG	5 cut(s)	14, 281, 396, 500, 665
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	2 cut(s)	606, 713
HpaII	CCGG	2 cut(s)	480, 515
HphI	GGTGA	1 cut(s)	529
Hpy188I	TCNGA	5 cut(s)	114, 148, 172, 436, 723
Hpy188III	TCNNGA	6 cut(s)	295, 341, 353, 610, 710, 769
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	4 cut(s)	322, 399, 494, 755
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4V	TGCA	5 cut(s)	34, 284, 463, 644, 671
HpyF3I	CTNAG	4 cut(s)	111, 147, 216, 296
Hsp92II	CATG	5 cut(s)	14, 281, 396, 500, 665
HspAI	GCGC	1 cut(s)	656
KpnI	GGTACC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	2 cut(s)	299, 688
LmnI	GCTCC	2 cut(s)	289, 297
LpnPI	CCDG	8 cut(s)	20, 228, 308, 344, 417, 493, 528, 723
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	5 cut(s)	37, 48, 547, 653, 658
MaeI	CTAG	2 cut(s)	416, 444
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	301, 690
MboI	GATC	2 cut(s)	299, 688
MboII	GAAGA	8 cut(s)	92, 97, 166, 173, 329, 677, 784, 787
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	3 cut(s)	294, 603, 684
MlsI	TGGCCA	1 cut(s)	226
MluCI	AATT	9 cut(s)	88, 141, 177, 365, 525, 675, 779, 798, 803
MluNI	TGGCCA	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	615, 722
MmeI	TCCRAC	2 cut(s)	459, 532
MnlI	CCTC	4 cut(s)	142, 211, 280, 438
Mox20I	TGGCCA	1 cut(s)	226
Mph1103I	ATGCAT	1 cut(s)	646
MscI	TGGCCA	1 cut(s)	226
MseI	TTAA	3 cut(s)	132, 492, 756
MslI	CAYNNNNRTG	2 cut(s)	458, 666
Msp20I	TGGCCA	1 cut(s)	226
MspI	CCGG	2 cut(s)	480, 515
NdeII	GATC	2 cut(s)	299, 688
NheI	GCTAGC	1 cut(s)	443
NlaIII	CATG	5 cut(s)	14, 281, 396, 500, 665
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	610
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PinAI	ACCGGT	1 cut(s)	514
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	614, 721
PpsI	GAGTC	2 cut(s)	614, 721
PscI	ACATGT	1 cut(s)	277
PshAI	GACNNNNGTC	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	4 cut(s)	414, 513, 587, 699
RsaNI	GTAC	4 cut(s)	413, 512, 586, 698
RseI	CAYNNNNRTG	2 cut(s)	458, 666
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	132, 492, 756
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	299, 688
ScaI	AGTACT	1 cut(s)	414
SchI	GAGTC	2 cut(s)	615, 722
SduI	GDGCHC	3 cut(s)	294, 603, 684
SetI	ASST	9 cut(s)	112, 222, 250, 294, 360, 421, 445, 635, 766
SfaNI	GCATC	5 cut(s)	37, 48, 547, 653, 658
SmiMI	CAYNNNNRTG	2 cut(s)	458, 666
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	9 cut(s)	88, 141, 177, 365, 525, 675, 779, 798, 803
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	416, 444
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	202, 770
TasI	AATT	9 cut(s)	88, 141, 177, 365, 525, 675, 779, 798, 803
TatI	WGTACW	2 cut(s)	412, 585
Tru1I	TTAA	3 cut(s)	132, 492, 756
Tru9I	TTAA	3 cut(s)	132, 492, 756
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	381, 513, 633, 678
XapI	RAATTY	4 cut(s)	88, 177, 779, 803
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	2 cut(s)	416, 444
ZrmI	AGTACT	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.