Rmu_co8112718.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8112718.1
Physical Location & Seq
Reverse (-)
100 .. 612
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8112718.1_g000001.1.cds

Sequence Viewer

Length: 367 bp
tatgcaagacgacggtcttaccggactacaacttaaacatgaaggaaaatgggtaccggtgaagccaattccaaactctttcgttgtgaatgttggagatgcgattgagatatggagtaatgggatgtacaagagcattgagcacagagtcgtgacaaatgaaagcaaagcaaggttatcttatgcatcattttttgcgccacatgaagatgcagaaattgagccctttgatcaaatggtactcaactctccagagtccattcagatatacaagaaagtcaaatatggagaatatattaaggaaggtatctcgaagaagaaattttatgagaaagaacaaattgaatttgccaagattggaagttag

Protein Analysis

121

Amino Acids

13.87

Weight (kDa)

5.93

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 321, 345
AfaI GTAC 3 cut(s) 55, 129, 241
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 345
Alw21I GWGCWC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 321, 345
AsiGI ACCGGT 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 71
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 145
BclI TGATCA 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 3 cut(s) 89, 195, 200
BoxI GACNNNNGTC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 21, 56
Bse118I RCCGGY 1 cut(s) 56
BseGI GGATG 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 22, 57
Bsp1286I GDGCHC 2 cut(s) 145, 226
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 15
BstAUI TGTACA 1 cut(s) 127
BstF5I GGATG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstPAI GACNNNNGTC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 130
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 56
Csp6I GTAC 3 cut(s) 54, 128, 240
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 2 cut(s) 39, 204
CviJI RGCY 2 cut(s) 65, 224
CviKI_1 RGCY 2 cut(s) 65, 224
CviQI GTAC 3 cut(s) 54, 128, 240
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 2 cut(s) 42, 207
FaiI YATR 9 cut(s) 3, 40, 113, 184, 205, 269, 286, 295, 328
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FatI CATG 2 cut(s) 38, 203
FbaI TGATCA 1 cut(s) 230
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 226
GlaI GCGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 235
HapII CCGG 2 cut(s) 22, 57
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 42, 207
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 2 cut(s) 148, 255
HpaII CCGG 2 cut(s) 22, 57
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 152, 252, 311
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 36, 297
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 5, 186, 213
Hsp92II CATG 2 cut(s) 42, 207
HspAI GCGC 1 cut(s) 198
KpnI GGTACC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 230
Kzo9I GATC 1 cut(s) 230
LpnPI CCDG 3 cut(s) 35, 70, 265
LweI GCATC 3 cut(s) 89, 195, 200
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 3 cut(s) 219, 326, 329
MhlI GDGCHC 2 cut(s) 145, 226
MluCI AATT 5 cut(s) 67, 217, 321, 340, 345
MlyI GAGTC 2 cut(s) 157, 264
MmeI TCCRAC 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 188
MseI TTAA 2 cut(s) 34, 298
MslI CAYNNNNRTG 1 cut(s) 208
MspI CCGG 2 cut(s) 22, 57
NdeII GATC 1 cut(s) 230
NlaIII CATG 2 cut(s) 42, 207
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 56
PleI GAGTC 2 cut(s) 156, 263
PpsI GAGTC 2 cut(s) 156, 263
PshAI GACNNNNGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 55
RsaI GTAC 3 cut(s) 55, 129, 241
RsaNI GTAC 3 cut(s) 54, 128, 240
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 2 cut(s) 34, 298
Sau3AI GATC 1 cut(s) 230
SchI GAGTC 2 cut(s) 157, 264
SduI GDGCHC 2 cut(s) 145, 226
SetI ASST 2 cut(s) 177, 308
SfaNI GCATC 3 cut(s) 89, 195, 200
SmiMI CAYNNNNRTG 1 cut(s) 208
Sse9I AATT 5 cut(s) 67, 217, 321, 340, 345
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 67, 217, 321, 340, 345
TatI WGTACW 1 cut(s) 127
Tru1I TTAA 2 cut(s) 34, 298
Tru9I TTAA 2 cut(s) 34, 298
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 55, 175, 220
XapI RAATTY 2 cut(s) 321, 345
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.