Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000451

Physical Location & Seq

Genomic Coordinates Forward (+)

12710290 .. 12710897

Gene Structure 608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG148100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGGATGGAGAAGGATGCTGTTCTCGGACTACATCAAGAGTTGGTCCAACCTCTGTCTGTAGCCTACTATCCTCAGTGCTCAATGCCTGAGAAAGTACTTGGTCTAAGTGCACACTCAGACAAAGGGAGCTTAGCCATAGTTATGCAAGAAGATGATGTAATGGGACTACAAATCAAACACAACGGAAAATGGGTACCAATCAAGCCCATTCACGATGCCTTCACTGTGAATGTTGGAGATATTATTGAGATATGGAGTAATGGGAAGTACAAGAGCATTGAACATAGAGTTGTAACAAACGAAAGCAGGGCGAGGATCTCTTATTCAACTTTTTGTTTACCACATCAAAATGCAGAAATTGAACCCCTGGATCAAATGATTCTTGCGTCACCGGGGTCTTTTCCGTTGTACAAGAAAGTCACTTATGGGGATTATCTGAGGGAAACCAAGAAGATGAAATCTGAAGGGAAGGCACATGTCGTTGAAGTTGCCAAGATTGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

169

Amino Acids

18.9

Weight (kDa)

6.65

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	19 - 115	1.7e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica	MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica	Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis	pycom04g12010 pycom04g12020
rosa_chinensis	RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata	RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora	Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa	Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha	Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana	Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	326, 381
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	4 cut(s)	99, 198, 272, 413
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	284, 330, 365, 488
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw21I	GWGCWC	2 cut(s)	83, 115
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	326, 381
ApaLI	GTGCAC	1 cut(s)	111
Asp718I	GGTACC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	196
Bbv12I	GWGCWC	2 cut(s)	83, 115
BciT130I	CCWGG	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	133
BmcAI	AGTACT	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	371, 396
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	2 cut(s)	371, 396
BmsI	GCATC	2 cut(s)	7, 208
Bpu1102I	GCTNAGC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	369, 395
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	369, 395
BseGI	GGATG	2 cut(s)	12, 22
BseMII	CTCAG	4 cut(s)	81, 89, 132, 431
BseSI	GKGCMC	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	83, 115
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	83, 115
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	318, 373
Bsp1720I	GCTNAGC	1 cut(s)	133
BspCNI	CTCAG	4 cut(s)	82, 88, 131, 432
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	2 cut(s)	326, 381
BspT107I	GGYRCC	1 cut(s)	196
BsrGI	TGTACA	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	369, 395
BssMI	GATC	2 cut(s)	318, 373
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	229
BstAUI	TGTACA	1 cut(s)	411
BstDEI	CTNAG	6 cut(s)	75, 90, 107, 118, 133, 440
BstF5I	GGATG	2 cut(s)	12, 22
BstKTI	GATC	2 cut(s)	321, 376
BstMBI	GATC	2 cut(s)	318, 373
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	369, 394
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	12, 22
BtsIMutI	CAGTG	2 cut(s)	83, 225
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	4 cut(s)	98, 197, 271, 412
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	4 cut(s)	65, 132, 137, 208
CviKI_1	RGCY	4 cut(s)	65, 132, 137, 208
CviQI	GTAC	4 cut(s)	98, 197, 271, 412
DdeI	CTNAG	6 cut(s)	75, 90, 107, 118, 133, 440
DpnI	GATC	2 cut(s)	320, 375
DpnII	GATC	2 cut(s)	318, 373
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	482
FaiI	YATR	6 cut(s)	140, 146, 256, 288, 429, 480
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	478
FokI	GGATG	2 cut(s)	19, 29
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	482
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	2 cut(s)	113, 341
Hpy188I	TCNGA	4 cut(s)	29, 121, 441, 466
Hpy188III	TCNNGA	2 cut(s)	38, 215
Hpy8I	GTNNAC	2 cut(s)	113, 341
HpyAV	CCTTC	4 cut(s)	7, 232, 461, 466
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	113, 148, 356
HpyF3I	CTNAG	6 cut(s)	75, 90, 107, 118, 133, 440
Hsp92II	CATG	1 cut(s)	482
KpnI	GGTACC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	318, 373
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	5 cut(s)	102, 295, 356, 383, 408
LweI	GCATC	2 cut(s)	7, 208
MaeIII	GTNAC	3 cut(s)	295, 390, 421
MalI	GATC	2 cut(s)	320, 375
MboI	GATC	2 cut(s)	318, 373
MboII	GAAGA	2 cut(s)	164, 466
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	83, 115
MluCI	AATT	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	73, 217
MnlI	CCTC	4 cut(s)	63, 84, 309, 435
MslI	CAYNNNNRTG	2 cut(s)	143, 351
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	371, 396
MvaI	CCWGG	1 cut(s)	371
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	2 cut(s)	318, 373
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	390, 421
NspI	RCATGY	1 cut(s)	482
PciI	ACATGT	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	382
PscI	ACATGT	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	4 cut(s)	99, 198, 272, 413
RsaNI	GTAC	4 cut(s)	98, 197, 271, 412
RseI	CAYNNNNRTG	2 cut(s)	143, 351
Sau3AI	GATC	2 cut(s)	318, 373
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	371, 396
SduI	GDGCHC	2 cut(s)	83, 115
SetI	ASST	2 cut(s)	55, 134
SfaNI	GCATC	2 cut(s)	7, 208
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	143, 351
Sse9I	AATT	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	369, 394
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	1 cut(s)	360
TatI	WGTACW	3 cut(s)	97, 270, 411
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	2 cut(s)	83, 232
TseFI	GTSAC	2 cut(s)	390, 421
Tsp45I	GTSAC	2 cut(s)	390, 421
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	2 cut(s)	201, 396
TspRI	CASTG	2 cut(s)	83, 232
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.