Rorug03G0079800

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
6224236 .. 6228027
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0079800.1

Sequence Viewer

Length: 1143 bp
ATGGCGAAATTGGCGTCTGTACAGAGACACCCTTCTTTCTCTCTCCTCCCTCCTTCTTCTCTCTCCGACTTCAATGGCACCAGGCTACTCCACTCTCAAGTCCAGTATAAGAGAAGGGTTTCACAGCCAAAAGGTGCATTGCAAGTTTCGGCTTCGAGTGCCAAGAAGATTCTCATAATGGGTGGGACTAGATTCATTGGTATCTTCTTGTCAAGGCTCCTTGTCAAAGAGGGTCATCAGGTGACTTTGTTTACCAGAGGAAAAGCACCCATCACTCAGCAGTTGCCAGGTGAATCGGATAGCGACTACACAGACTTTGCTTCCAAGATTTTGCATTTGAAAGGAGACAGAAAGGACTTTGATTTTGTGAAGTCCAGTCTTTCAGCTGAAGGCTTTGATGTTGTTTATGACATAAACGGACGAGAGGCAGAGGAGATTGTGCCCATATTGGATGGACTTCCGAAGTTAGAACAGTACATATACTGCTCTTCAGCTGGTGTTTATCTCAAATCTGATCAATTGCCTCACTTTGAGATCGATGCAGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTGAGACAGAAAGCTTGCTTGAATCAAGGGGTGTAAATTGGACTTCTATAAGGCCGGTCTACATCTATGGACCGTTGAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGGTTGAAAGCTGGCCGCCCAATTCCAGTTCCAAACTCGGGAATACAAATAACACAACTCGGTCATGTTAAGGATTTAGCAACCGCATTTATTAAGGTTCTTGGTAATGAAAAGGCCAGCAAGGAAGTGTTCAACATCTCTGGAGAAAAATATGTCACCTTTGATGGATTAGCAAAAGCATGTGCAAAGGCTGCTGGATTTCCTGAGCCTGAGATTGTTCACTATAACCCTAAGGAGTTTGACTTTGGGAAGAAGAAGGCATTTCCATTTCGTGACCAGCATTTCTTTGCATCGATTGACAAAGCGAAGAGCGTGCTTGGGTGGAAACCCGAATATGGCCTGGTCGAAGGTCTTGCAGACTCCTACAACCTAGACTTTGGCAGAGGGACATTCAGGAAAGCAGCTGATTTTTCAACAGATGACATCATTCTTGGCAAGAGTCTTGTTCTCCAAAGCTAG

Protein Analysis

380

Amino Acids

42.32

Weight (kDa)

8.98

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 57 - 274 4.5e-15 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 61 - 213 2.1e-06 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 633
AciI CCGC 2 cut(s) 700, 768
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 697
AcuI CTGAAG 2 cut(s) 408, 474
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 21, 476
AfiI CCNNNNNNNGG 2 cut(s) 722, 1019
AgeI ACCGGT 1 cut(s) 684
AgsI TTSAA 8 cut(s) 73, 340, 596, 652, 668, 691, 817, 1098
AjnI CCWGG 3 cut(s) 80, 286, 1023
AluBI AGCT 7 cut(s) 386, 494, 574, 588, 695, 1088, 1140
AluI AGCT 7 cut(s) 386, 494, 574, 588, 695, 1088, 1140
Alw26I GTCTC 3 cut(s) 19, 339, 572
AlwI GGATC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 721
AoxI GGCC 4 cut(s) 626, 697, 798, 1021
ApeKI GCWGC 2 cut(s) 875, 1085
ArsI GACNNNNNNTTYG 3 cut(s) 31, 347, 379
AsiGI ACCGGT 1 cut(s) 684
Asp700I GAANNNNTTC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 3 cut(s) 253, 302, 832
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 915
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 862, 1097
BccI CCATC 3 cut(s) 278, 446, 842
BcgI CGANNNNNNTGC 4 cut(s) 979, 1013, 1019, 1053
BciT130I CCWGG 3 cut(s) 82, 288, 1025
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 19, 339, 572
BfaI CTAG 3 cut(s) 189, 1055, 1141
BisI GCNGC 3 cut(s) 700, 876, 1086
BlsI GCNGC 3 cut(s) 701, 877, 1087
Bme1390I CCNGG 3 cut(s) 82, 288, 1025
Bme18I GGWCC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 79, 218
BmrFI CCNGG 3 cut(s) 82, 288, 1025
BmsI GCATC 2 cut(s) 529, 983
BpmI CTGGAG 1 cut(s) 846
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 81, 596
Bsa29I ATCGAT 2 cut(s) 537, 977
BsaHI GRCGYC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 684
Bsc4I CCNNNNNNNGG 2 cut(s) 722, 1019
Bse118I RCCGGY 2 cut(s) 628, 684
Bse1I ACTGG 3 cut(s) 103, 375, 710
Bse21I CCTNAGG 1 cut(s) 915
Bse3DI GCAATG 1 cut(s) 137
BseBI CCWGG 3 cut(s) 82, 288, 1025
BseCI ATCGAT 2 cut(s) 537, 977
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 722, 1019
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 3 cut(s) 290, 879, 885
BseNI ACTGG 3 cut(s) 103, 375, 710
BseRI GAGGAG 2 cut(s) 35, 446
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 2 cut(s) 862, 1097
BshFI GGCC 4 cut(s) 628, 699, 800, 1023
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 684
BshVI ATCGAT 2 cut(s) 537, 977
BsiHKCI CYCGRG 1 cut(s) 721
BsiSI CCGG 2 cut(s) 629, 685
BslFI GGGAC 2 cut(s) 199, 1084
BslI CCNNNNNNNGG 2 cut(s) 722, 1019
BsmAI GTCTC 3 cut(s) 19, 339, 572
BsmFI GGGAC 2 cut(s) 199, 1084
BsnI GGCC 4 cut(s) 628, 699, 800, 1023
BsoBI CYCGRG 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 3 cut(s) 514, 534, 547
BspACI CCGC 2 cut(s) 700, 768
BspANI GGCC 4 cut(s) 628, 699, 800, 1023
BspCNI CTCAG 3 cut(s) 289, 880, 886
BspDI ATCGAT 2 cut(s) 537, 977
BspLI GGNNCC 2 cut(s) 79, 218
BspPI GGATC 1 cut(s) 542
BspQI GCTCTTC 2 cut(s) 493, 986
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 628, 684
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 3 cut(s) 103, 375, 710
BssAI RCCGGY 2 cut(s) 628, 684
BssMI GATC 3 cut(s) 514, 534, 547
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 3 cut(s) 82, 288, 1025
Bst4CI ACNGT 2 cut(s) 474, 648
Bst6I CTCTTC 3 cut(s) 493, 663, 986
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 19
BstC8I GCNNGC 5 cut(s) 560, 590, 697, 802, 998
BstDEI CTNAG 4 cut(s) 276, 888, 894, 915
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 3 cut(s) 517, 537, 550
BstMAI GTCTC 3 cut(s) 19, 339, 572
BstMBI GATC 3 cut(s) 514, 534, 547
BstMWI GCNNNNNNNGC 3 cut(s) 11, 158, 875
BstNI CCWGG 3 cut(s) 82, 288, 1025
BstNSI RCATGY 1 cut(s) 867
BstSCI CCNGG 3 cut(s) 80, 286, 1023
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 862, 1097
Bsu15I ATCGAT 2 cut(s) 537, 977
Bsu36I CCTNAGG 1 cut(s) 915
BsuRI GGCC 4 cut(s) 628, 699, 800, 1023
BsuTUI ATCGAT 2 cut(s) 537, 977
BtsCI GGATG 1 cut(s) 457
Cac8I GCNNGC 5 cut(s) 560, 590, 697, 802, 998
Cfr10I RCCGGY 2 cut(s) 628, 684
Cfr13I GGNCC 1 cut(s) 644
ClaI ATCGAT 2 cut(s) 537, 977
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 20, 475
CspAI ACCGGT 1 cut(s) 684
CviAII CATG 2 cut(s) 749, 864
CviQI GTAC 2 cut(s) 20, 475
DdeI CTNAG 4 cut(s) 276, 888, 894, 915
DpnI GATC 3 cut(s) 516, 536, 549
DpnII GATC 3 cut(s) 514, 534, 547
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 3 cut(s) 493, 663, 986
EarI CTCTTC 3 cut(s) 493, 663, 986
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 408, 474
Eco81I CCTNAGG 1 cut(s) 915
Eco88I CYCGRG 1 cut(s) 721
EcoRII CCWGG 3 cut(s) 80, 286, 1023
FaeI CATG 2 cut(s) 752, 867
FaqI GGGAC 2 cut(s) 199, 1084
FatI CATG 2 cut(s) 748, 863
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 3 cut(s) 700, 876, 1086
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 3 cut(s) 700, 876, 1086
FspBI CTAG 3 cut(s) 189, 1055, 1141
GluI GCNGC 3 cut(s) 700, 876, 1086
GsuI CTGGAG 1 cut(s) 846
HaeIII GGCC 4 cut(s) 628, 699, 800, 1023
HapII CCGG 2 cut(s) 629, 685
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 2 cut(s) 752, 867
HindIII AAGCTT 2 cut(s) 572, 586
HinfI GANTC 6 cut(s) 169, 192, 293, 596, 1043, 1123
HpaII CCGG 2 cut(s) 629, 685
HphI GGTGA 3 cut(s) 253, 302, 832
Hpy166II GTNNAC 3 cut(s) 252, 634, 904
Hpy188I TCNGA 4 cut(s) 67, 298, 462, 514
Hpy188III TCNNGA 5 cut(s) 723, 825, 887, 956, 1078
Hpy8I GTNNAC 3 cut(s) 252, 634, 904
HpyAV CCTTC 6 cut(s) 42, 63, 108, 383, 934, 1025
HpyCH4III ACNGT 2 cut(s) 474, 648
HpyCH4V TGCA 7 cut(s) 137, 142, 334, 542, 869, 974, 1040
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 158, 875
HpyF3I CTNAG 4 cut(s) 276, 888, 894, 915
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 752, 867
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 514, 534, 547
LguI GCTCTTC 2 cut(s) 493, 986
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 2 cut(s) 862, 1097
LweI GCATC 2 cut(s) 529, 983
MaeI CTAG 3 cut(s) 189, 1055, 1141
MaeIII GTNAC 3 cut(s) 241, 838, 956
MalI GATC 3 cut(s) 516, 536, 549
MboI GATC 3 cut(s) 514, 534, 547
MboII GAAGA 9 cut(s) 48, 178, 196, 480, 670, 680, 946, 949, 1003
MfeI CAATTG 1 cut(s) 518
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 4 cut(s) 8, 518, 610, 705
MlyI GAGTC 2 cut(s) 1037, 1132
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 8 cut(s) 56, 60, 223, 251, 418, 424, 534, 1061
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 2 cut(s) 753, 777
MspA1I CMGCKG 3 cut(s) 386, 494, 1088
MspI CCGG 2 cut(s) 629, 685
MspR9I CCNGG 3 cut(s) 82, 288, 1025
MunI CAATTG 1 cut(s) 518
MvaI CCWGG 3 cut(s) 82, 288, 1025
MwoI GCNNNNNNNGC 3 cut(s) 11, 158, 875
NdeII GATC 3 cut(s) 514, 534, 547
NlaIII CATG 2 cut(s) 752, 867
NlaIV GGNNCC 2 cut(s) 79, 218
NmuCI GTSAC 3 cut(s) 241, 838, 956
NspI RCATGY 1 cut(s) 867
PciSI GCTCTTC 2 cut(s) 493, 986
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 4 cut(s) 169, 192, 293, 596
PinAI ACCGGT 1 cut(s) 684
PkrI GCNGC 3 cut(s) 701, 877, 1087
PleI GAGTC 2 cut(s) 1037, 1131
PpsI GAGTC 2 cut(s) 1037, 1131
Psp6I CCWGG 3 cut(s) 80, 286, 1023
PspGI CCWGG 3 cut(s) 80, 286, 1023
PspN4I GGNNCC 2 cut(s) 79, 218
PspPI GGNCC 1 cut(s) 644
PvuII CAGCTG 3 cut(s) 386, 494, 1088
RsaI GTAC 2 cut(s) 21, 476
RsaNI GTAC 2 cut(s) 20, 475
SapI GCTCTTC 2 cut(s) 493, 986
SaqAI TTAA 2 cut(s) 753, 777
SatI GCNGC 3 cut(s) 700, 876, 1086
Sau3AI GATC 3 cut(s) 514, 534, 547
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 2 cut(s) 1037, 1132
ScrFI CCNGG 3 cut(s) 82, 288, 1025
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 2 cut(s) 529, 983
SinI GGWCC 1 cut(s) 644
SmlI CTYRAG 2 cut(s) 96, 575
SmoI CTYRAG 2 cut(s) 96, 575
Sse9I AATT 4 cut(s) 8, 518, 610, 705
SsiI CCGC 2 cut(s) 700, 768
SspMI CTAG 3 cut(s) 189, 1055, 1141
StyD4I CCNGG 3 cut(s) 80, 286, 1023
TaaI ACNGT 2 cut(s) 474, 648
TaqI TCGA 4 cut(s) 155, 537, 977, 1029
TaqII GACCGA 1 cut(s) 734
TasI AATT 4 cut(s) 8, 518, 610, 705
TatI WGTACW 2 cut(s) 19, 474
TauI GCSGC 1 cut(s) 702
TfiI GAWTC 4 cut(s) 169, 192, 293, 596
Tru1I TTAA 2 cut(s) 753, 777
Tru9I TTAA 2 cut(s) 753, 777
TseFI GTSAC 3 cut(s) 241, 838, 956
TseI GCWGC 2 cut(s) 875, 1085
Tsp45I GTSAC 3 cut(s) 241, 838, 956
TspDTI ATGAA 2 cut(s) 184, 807
TspGWI ACGGA 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 644
XceI RCATGY 1 cut(s) 867
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 3 cut(s) 189, 1055, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.