Rroxscaffold_6G00414770

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000451
Physical Location & Seq
Reverse (-)
37040676 .. 37041605
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414770.1

Sequence Viewer

Length: 534 bp
ATGAGTTCAGGTACAGATGTAGGATTAGTTCAAGTAGAGGTTGCACCAACTTTTGGTCCATCTCTGCCAGTGCCAAATGTTCAAGAGATTGTGAGGACTGACCCTTTGCAGGTCCCCGAAAGATACCTTAGGGATCAAGAAGCGATTCCAGAGAATAAAGATCATACTACTTCTGACCTATCTACGGAGATTCCTATCATTGATTTTTCTCTTCTTTCGAAAGGGAACAAGGAGGAGCTTGACAAATTGGACATGGCTTGCCAAGAATGGGGATTCTTTCAGATAGTAAATCATGGAGTGGAAAAAGAAGTGTTGCAGGGCATGAAGGATGTTGCGGCCAAGTTTTTTGAGCTTCCTCTAGAAGAGAAGAATAAGGTTGCTATGCCTTCAGATGACATACAAGGCTACGGCCATGCCTATGTGGTTTCTGAAGACCAGATTCTGGATTGGTCTGATACATTGATTCTCATCGTGTACCCAACTCATTATAGAAAGCTTCAGTTTTGGCCAGCAGTACCAGAGAAATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

177

Amino Acids

20.09

Weight (kDa)

4.58

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 64 - 171 2.1e-31 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 2 cut(s) 53, 442
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 3 cut(s) 336, 409, 506
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 3 cut(s) 372, 450, 482
AfaI GTAC 3 cut(s) 13, 476, 516
AfiI CCNNNNNNNGG 5 cut(s) 53, 109, 184, 268, 442
AgsI TTSAA 3 cut(s) 32, 83, 529
AluBI AGCT 3 cut(s) 238, 352, 496
AluI AGCT 3 cut(s) 238, 352, 496
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 442
AoxI GGCC 3 cut(s) 336, 409, 506
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 56, 112
AsuII TTCGAA 1 cut(s) 218
AvaII GGWCC 2 cut(s) 56, 112
AxyI CCTNAGG 1 cut(s) 128
BaeI ACNNNNGTAYC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 438
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 424
BfaI CTAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme18I GGWCC 2 cut(s) 56, 112
BmgT120I GGNCC 2 cut(s) 56, 112
BmiI GGNNCC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 218
BsaBI GATNNNNATC 2 cut(s) 194, 467
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 109, 184, 268, 442
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 128
Bse8I GATNNNNATC 2 cut(s) 194, 467
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 2 cut(s) 194, 467
BseLI CCNNNNNNNGG 5 cut(s) 53, 109, 184, 268, 442
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 248
BshFI GGCC 3 cut(s) 338, 411, 508
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 5 cut(s) 53, 109, 184, 268, 442
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 3 cut(s) 338, 411, 508
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 2 cut(s) 133, 160
BspACI CCGC 1 cut(s) 335
BspANI GGCC 3 cut(s) 338, 411, 508
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 218
BsrI ACTGG 1 cut(s) 68
BssMI GATC 2 cut(s) 133, 160
Bst6I CTCTTC 2 cut(s) 216, 357
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 259, 510
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 136, 163
BstMBI GATC 2 cut(s) 133, 160
BstV2I GAAGAC 1 cut(s) 438
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 3 cut(s) 338, 411, 508
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 259, 510
CaiI CAGNNNCTG 1 cut(s) 442
Cfr13I GGNCC 2 cut(s) 56, 112
Csp6I GTAC 3 cut(s) 12, 475, 515
CviAII CATG 4 cut(s) 253, 293, 322, 413
CviJI RGCY 8 cut(s) 238, 257, 338, 352, 405, 411, 496, 508
CviKI_1 RGCY 8 cut(s) 238, 257, 338, 352, 405, 411, 496, 508
CviQI GTAC 3 cut(s) 12, 475, 515
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 135, 162
DpnII GATC 2 cut(s) 133, 160
EaeI YGGCCR 3 cut(s) 336, 409, 506
Eam1104I CTCTTC 2 cut(s) 216, 357
EarI CTCTTC 2 cut(s) 216, 357
Eco47I GGWCC 2 cut(s) 56, 112
Eco57I CTGAAG 3 cut(s) 372, 450, 482
Eco81I CCTNAGG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 112
FaeI CATG 4 cut(s) 256, 296, 325, 416
FaiI YATR 9 cut(s) 165, 254, 294, 323, 383, 398, 414, 420, 489
FaqI GGGAC 1 cut(s) 98
FatI CATG 4 cut(s) 252, 292, 321, 412
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 338, 411, 508
Hin1II CATG 4 cut(s) 256, 296, 325, 416
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 5 cut(s) 145, 190, 273, 439, 463
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 5 cut(s) 175, 282, 391, 430, 454
Hpy188III TCNNGA 5 cut(s) 83, 137, 149, 359, 443
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 319, 396
HpyCH4V TGCA 3 cut(s) 44, 109, 316
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 4 cut(s) 256, 296, 325, 416
Kzo9I GATC 2 cut(s) 133, 160
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 7 cut(s) 81, 95, 162, 302, 428, 449, 522
MaeI CTAG 1 cut(s) 359
MalI GATC 2 cut(s) 135, 162
MboI GATC 2 cut(s) 133, 160
MboII GAAGA 4 cut(s) 203, 374, 379, 443
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 2 cut(s) 245, 524
MluNI TGGCCA 1 cut(s) 508
MnlI CCTC 4 cut(s) 31, 87, 226, 366
Mox20I TGGCCA 1 cut(s) 508
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 508
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 508
NdeII GATC 2 cut(s) 133, 160
NlaIII CATG 4 cut(s) 256, 296, 325, 416
NlaIV GGNNCC 1 cut(s) 114
NspV TTCGAA 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 5 cut(s) 145, 190, 273, 439, 463
PflMI CCANNNNNTGG 2 cut(s) 53, 442
PkrI GCNGC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 56, 112
PspPPI RGGWCCY 1 cut(s) 112
PsrI GAACNNNNNNTAC 2 cut(s) 12, 44
PstNI CAGNNNCTG 1 cut(s) 442
RsaI GTAC 3 cut(s) 13, 476, 516
RsaNI GTAC 3 cut(s) 12, 475, 515
RseI CAYNNNNRTG 1 cut(s) 417
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 133, 160
Sau96I GGNCC 2 cut(s) 56, 112
SetI ASST 9 cut(s) 13, 42, 114, 129, 180, 240, 354, 378, 498
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 2 cut(s) 56, 112
SmiMI CAYNNNNRTG 1 cut(s) 417
Sse9I AATT 2 cut(s) 245, 524
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 359
TaqI TCGA 1 cut(s) 218
TasI AATT 2 cut(s) 245, 524
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 5 cut(s) 145, 190, 273, 439, 463
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 2 cut(s) 53, 442
VpaK11BI GGWCC 2 cut(s) 56, 112
XapI RAATTY 1 cut(s) 524
XbaI TCTAGA 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.