Rh3DG147800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000451
Physical Location & Seq
Forward (+)
12675374 .. 12675963
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG147800.1

Sequence Viewer

Length: 501 bp
ATGGAGAAGGATGTTCTTCTTGGACTGCATCAAGATTTGGCAGCAGCATTGCGCATAAACTACATTCCTCCATGCTCTATGCCTGATAAAGTACTAGGTCTAAGTGCACATGCGGATGCAGGCACCATTATTGTACTTATGCAAGAAGATAATGTTATCGGATTACAGATTCGAAAACAAGGACAATGGGTGTCAGTCAAGCCGATTCCAAACTCTTTGGTTGTGAATGTTGGAGATGCTCTTGAGATATGGAGCAACGGGAAGTACAAAAGCATTGAACACAGAGCTGTGACAAACGAAAGCAAGGCAAGGATGTCTAATGCATCATTTATCTTTCCACATGTCGATGTGGAAATTGAGCCGTTCGATCATATACTGGAGTCATCAGGGACCATTCAGATGTATAAGAAGGTCAAATATGGAGATTATTTGATTCAATGCTTGAAGAGGAAAATGGAGGGGAAGGAACACACTCAAAATGCAAAATTAGGAAGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

166

Amino Acids

18.51

Weight (kDa)

7.01

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 16 - 113 9.6e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 1 cut(s) 113
AfaI GTAC 4 cut(s) 93, 135, 266, 496
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 3 cut(s) 278, 437, 445
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 109
Alw44I GTGCAC 1 cut(s) 105
ApaLI GTGCAC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 41, 44
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 390
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 53, 56
BceAI ACGGC 1 cut(s) 346
BfaI CTAG 1 cut(s) 95
BisI GCNGC 2 cut(s) 42, 45
BlsI GCNGC 2 cut(s) 43, 46
BmcAI AGTACT 2 cut(s) 93, 496
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 124, 391
BmsI GCATC 4 cut(s) 37, 106, 226, 332
BpmI CTGGAG 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 47
BseGI GGATG 3 cut(s) 16, 121, 318
BseMI GCAATG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 2 cut(s) 53, 56
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 124, 391
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 381
BssMI GATC 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 16, 121, 318
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 113, 344
BstSLI GKGCMC 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 53, 56
BtsCI GGATG 3 cut(s) 16, 121, 318
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 390
Csp6I GTAC 4 cut(s) 92, 134, 265, 495
CviAII CATG 3 cut(s) 72, 110, 341
CviJI RGCY 3 cut(s) 202, 287, 361
CviKI_1 RGCY 3 cut(s) 202, 287, 361
CviQI GTAC 4 cut(s) 92, 134, 265, 495
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 325
FaeI CATG 3 cut(s) 75, 113, 344
FaqI GGGAC 1 cut(s) 403
FatI CATG 3 cut(s) 71, 109, 340
Fnu4HI GCNGC 2 cut(s) 42, 45
FokI GGATG 3 cut(s) 23, 128, 325
Fsp4HI GCNGC 2 cut(s) 42, 45
FspBI CTAG 1 cut(s) 95
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 42, 45
GsuI CTGGAG 1 cut(s) 398
HhaI GCGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 75, 113, 344
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 4 cut(s) 169, 205, 380, 433
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 2 cut(s) 161, 399
Hpy188III TCNNGA 2 cut(s) 32, 242
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 403, 457
HpyCH4V TGCA 6 cut(s) 28, 107, 119, 142, 323, 482
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 3 cut(s) 75, 113, 344
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 96, 105, 362, 372
Lsp1109I GCAGC 2 cut(s) 53, 56
LweI GCATC 4 cut(s) 37, 106, 226, 332
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 8, 158, 457
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 2 cut(s) 354, 485
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 78, 441, 451
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 1 cut(s) 499
MslI CAYNNNNRTG 3 cut(s) 114, 345, 398
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 75, 113, 344
NlaIV GGNNCC 2 cut(s) 124, 391
NmuCI GTSAC 1 cut(s) 289
NsbI TGCGCA 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 2 cut(s) 113, 344
NspV TTCGAA 1 cut(s) 172
PciI ACATGT 1 cut(s) 340
PfeI GAWTC 3 cut(s) 169, 205, 433
PkrI GCNGC 2 cut(s) 43, 46
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PscI ACATGT 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 124, 391
PspPI GGNCC 1 cut(s) 390
RsaI GTAC 4 cut(s) 93, 135, 266, 496
RsaNI GTAC 4 cut(s) 92, 134, 265, 495
RseI CAYNNNNRTG 3 cut(s) 114, 345, 398
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 2 cut(s) 42, 45
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 390
ScaI AGTACT 2 cut(s) 93, 496
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 109
SetI ASST 3 cut(s) 100, 289, 414
SfaNI GCATC 4 cut(s) 37, 106, 226, 332
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 3 cut(s) 114, 345, 398
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 354, 485
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 95
TaqI TCGA 3 cut(s) 172, 345, 366
TasI AATT 2 cut(s) 354, 485
TatI WGTACW 4 cut(s) 91, 133, 264, 494
TfiI GAWTC 3 cut(s) 169, 205, 433
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 41, 44
Tsp45I GTSAC 1 cut(s) 289
VneI GTGCAC 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 390
XceI RCATGY 2 cut(s) 113, 344
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 2 cut(s) 93, 496
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.