Rmu_ssc0000303.1_g000004

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000303.1
OG0000451
Physical Location & Seq
Forward (+)
18393 .. 19049
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000303.1_g000004.1.cds

Sequence Viewer

Length: 573 bp
atggaagcaattgaggcatattctactgaagttaaaaggattggagaggagctcttagggtctatctctcaaattatggggatgcagaaggatgctcttcttggatttcatcaagagttggtccaagtttttcgtgtgacctactatcctccgtgctccaagccagataaagtactaggcttaagtccacactccgacacaagcaccataaccattctcatgcaggaagacgatgttaccggattacatattcgaaaagaaggaaaatgggtgccggtagagccaattccaaatgctttcgttgtgaatgtcggagatatgattgagatatggagtaatgggaagtacaagagcattgaacatagagctgtgacgaacaaaagcaaggcaagattatcttatgcaacatttataattccacgtaacgatgttgaaattggaccatttaatcatttagtggaccagtcatctcgaaagtacaagaaagtcatatacggagaatatttgaggagttccttgaagggaaaacttgaggggaagtcgcacactgaaacagcaaagatcagaagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Thaumatin

Protein Analysis

190

Amino Acids

21.47

Weight (kDa)

8.84

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000451)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g13280 FvH4_6g13281 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13290 FvH4_6g13300 FvH4_6g13322
malus_domestica MD04G1132000.v1.1 MD04G1132100.v1.1 MD04G1132400.v1.1 MD12G1145100.v1.1 MD12G1145200.v1.1
prunus_persica Prupe.6G258600_v2.0.a1 Prupe.6G258700_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258800_v2.0.a1 Prupe.6G258900_v2.0.a1
pyrus_communis pycom04g12010 pycom04g12020
rosa_chinensis RchiOBHm_Chr3g0466131 RchiOBHm_Chr3g0466151 RchiOBHm_Chr3g0466161 RchiOBHm_Chr3g0466171 RchiOBHm_Chr3g0466181 RchiOBHm_Chr3g0466201 RchiOBHm_Chr3g0466211 RchiOBHm_Chr6g0251841
rosa_laevigata RLG00000015425 RLG00000024596 RLG00000024599 RLG00000024600 RLG00000024601 RLG00000024602
rosa_multiflora Rmu_co8112718.1_g000001 Rmu_co8178858.1_g000001 Rmu_co8388385.1_g000001 Rmu_sc0000350.1_g000002 Rmu_sc0000350.1_g000003 Rmu_sc0000350.1_g000004 Rmu_sc0000350.1_g000006 Rmu_sc0000350.1_g000011 Rmu_sc0002249.1_g000004 Rmu_sc0007597.1_g000012 Rmu_sc0012177.1_g000002 Rmu_sc0012177.1_g000006 Rmu_sc0012177.1_g000007 Rmu_sc0022084.1_g000003 Rmu_ssc0000303.1_g000004
rosa_roxburghii Rroxscaffold_6G00414720 Rroxscaffold_6G00414730 Rroxscaffold_6G00414740 Rroxscaffold_6G00414750 Rroxscaffold_6G00414760 Rroxscaffold_6G00414770 Rroxscaffold_6G00414780 Rroxscaffold_6G00414790
rosa_rugosa Rorug03G0079600 Rorug03G0079600 Rorug03G0079800 Rorug03G0080100 Rorug03G0080200 Rorug03G0080300 Rorug03G0080400 Rorug05G0504900
rosa_samantha Rh3BG147200 Rh3BG147300 Rh3BG147400 Rh3BG147500 Rh3BG147600 Rh3CG147900 Rh3CG148000 Rh3CG148100 Rh3CG148200 Rh3CG148300 Rh3CG148500 Rh3CG148600 Rh3DG147800 Rh3DG147900 Rh3DG148100 Rh3DG148300 Rh4BG237100 Rh6AG015600 Rh6AG015700 Rh6BG013700 Rh6CG069500
rosa_wichuraiana Rw3G011870 Rw3G011880 Rw3G011890 Rw3G011900 Rw3G011910 Rw3G011930 Rw6G001500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 174, 347, 479
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 359, 434, 520
AluBI AGCT 2 cut(s) 52, 368
AluI AGCT 2 cut(s) 52, 368
Alw21I GWGCWC 2 cut(s) 54, 158
AspS9I GGNCC 3 cut(s) 121, 440, 460
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 3 cut(s) 121, 440, 460
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 54, 158
BfaI CTAG 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 174
Bme18I GGWCC 3 cut(s) 121, 440, 460
BmgT120I GGNCC 3 cut(s) 121, 440, 460
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 2 cut(s) 72, 82
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 36, 68
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 551
BsaAI YACGTR 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 463
BseGI GGATG 2 cut(s) 87, 97
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 62, 523
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 54, 158
BsiSI CCGG 2 cut(s) 240, 275
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 54, 158
Bsp143I GATC 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 102
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 274
BssMI GATC 1 cut(s) 561
Bst6I CTCTTC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 87, 97
BstKTI GATC 1 cut(s) 564
BstMBI GATC 1 cut(s) 561
BstMWI GCNNNNNNNGC 2 cut(s) 14, 280
BstV2I GAAGAC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 87, 97
BtsIMutI CAGTG 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 121, 440, 460
Csp6I GTAC 3 cut(s) 173, 346, 478
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 52, 163, 180, 283, 368
CviKI_1 RGCY 5 cut(s) 52, 163, 180, 283, 368
CviQI GTAC 3 cut(s) 173, 346, 478
DdeI CTNAG 1 cut(s) 55
DpnI GATC 1 cut(s) 563
DpnII GATC 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 3 cut(s) 121, 440, 460
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 223
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 1 cut(s) 219
FokI GGATG 2 cut(s) 94, 104
FriOI GRGCYC 1 cut(s) 54
FspBI CTAG 1 cut(s) 176
HapII CCGG 2 cut(s) 240, 275
Hin1II CATG 1 cut(s) 223
HpaII CCGG 2 cut(s) 240, 275
Hpy166II GTNNAC 2 cut(s) 188, 460
Hpy188I TCNGA 3 cut(s) 196, 314, 566
Hpy188III TCNNGA 2 cut(s) 113, 471
Hpy8I GTNNAC 2 cut(s) 188, 460
HpyAV CCTTC 3 cut(s) 82, 254, 514
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 85, 223, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 280
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 561
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 49, 161
LpnPI CCDG 5 cut(s) 177, 209, 253, 288, 476
LweI GCATC 2 cut(s) 72, 82
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 4 cut(s) 136, 235, 370, 422
MalI GATC 1 cut(s) 563
MboI GATC 1 cut(s) 561
MboII GAAGA 2 cut(s) 89, 239
MfeI CAATTG 1 cut(s) 9
MhlI GDGCHC 2 cut(s) 54, 158
MluCI AATT 5 cut(s) 9, 72, 285, 414, 435
MmeI TCCRAC 2 cut(s) 219, 292
MnlI CCTC 5 cut(s) 7, 40, 159, 501, 526
MseI TTAA 4 cut(s) 33, 182, 447, 571
MslI CAYNNNNRTG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 2 cut(s) 240, 275
MunI CAATTG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 14, 280
NdeII GATC 1 cut(s) 561
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 2 cut(s) 136, 370
NspV TTCGAA 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 102
Ppu21I YACGTR 1 cut(s) 422
PsiI TTATAA 1 cut(s) 413
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 3 cut(s) 121, 440, 460
RsaI GTAC 3 cut(s) 174, 347, 479
RsaNI GTAC 3 cut(s) 173, 346, 478
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 33, 182, 447, 571
Sau3AI GATC 1 cut(s) 561
Sau96I GGNCC 3 cut(s) 121, 440, 460
ScaI AGTACT 1 cut(s) 174
SduI GDGCHC 2 cut(s) 54, 158
SetI ASST 4 cut(s) 54, 143, 370, 424
SfaNI GCATC 2 cut(s) 72, 82
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 3 cut(s) 121, 440, 460
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 181, 530
SmoI CTYRAG 2 cut(s) 181, 530
Sse9I AATT 5 cut(s) 9, 72, 285, 414, 435
SspI AATATT 1 cut(s) 503
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 54
TaiI ACGT 1 cut(s) 424
TaqI TCGA 2 cut(s) 253, 472
TasI AATT 5 cut(s) 9, 72, 285, 414, 435
TatI WGTACW 3 cut(s) 172, 345, 477
Tru1I TTAA 4 cut(s) 33, 182, 447, 571
Tru9I TTAA 4 cut(s) 33, 182, 447, 571
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 2 cut(s) 136, 370
Tsp45I GTSAC 2 cut(s) 136, 370
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 2 cut(s) 141, 510
TspRI CASTG 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 121, 440, 460
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.